BAC Information

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BAC

Clone NameMSMg01-498B07
Chromosome3 (Build37)
Map Location 45,201,142 - 45,201,730
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10
Downstream geneLOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498B07.T7 (MSMg01no498_b07.b1)MSMg01-498B07.TJ (MSMg01no498_b07.g1)
ACCAG574492AG574493
length765750
length of high quality
(start - end)
644 (53 - 696)589 (59 - 647)
definitionCHROMAT_FILE: MSMg01no498_b07.b1 PHD_FILE: MSMg01no498_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:59 2005CHROMAT_FILE: MSMg01no498_b07.g1 PHD_FILE: MSMg01no498_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGAAGTTTTCCTCCAACTAAATAAATACATAAATAAA
TATGGGTACAGAGCTAAACAAAAAATTCTCAACAGAGAACCTTGAATGGC
TAAGAAGCACTAAAAGTAATGTTCAACAGCCTAAATCAAAATGACCCTGT
GATTCTACTTTAAACCAATCAGAATATTAAGATCAAAAACACAAGTGACA
TTACATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTTCATTACTGG
TTGAATTGCAAACTTGTACAACCACTCTGGAAATCAATCTGGAGGTTTCT
CAAAATATTGGAATAGTTCTCCCTGAAGATCCAACCATACTACTCCTGGG
CAAATACCCAAAAGATGTTCCACCATACATGTGCTCCACTATGTTCATAG
CAGCTTTATTTGTAATAGCCAGAAATTAGAAACCACTCAGATGTCCCTCA
ACTGAAGAGTGCATACAGAAAATGTGGTTTAATTACCCAAGAGAATACTA
TCCAACTATTAAAGACAAGGACATTGTGAATTTTTTCAGGTAAATAGATG
GAACTAGAAAATATCATTCTGAATGAGGCAATCCAAAGCCAAAAGGACAG
ACATGGTATGTACTCACTGATAAGTGGGTATTAGCCATAAAATCCAGGAT
ATCCATGGTATATCCCACAGACCTAAAGAATTTTAATAAGAAGGAAAACC
CAAGCATATCTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGAAAAACAATAGCACCACTGGAGTGAGCAGATGACCACAGA
TTTGTCAAAAAGGGATAAATTGAAATTTTAAGTAAATTGGATCTGGGTGT
GAGAAAAACAAAACAAACCAAGAGATTAGCAAAAATCCTTTCAGAAATAC
TTGGCTAATAAGTAAGAGAACTTGGAAAAAAAAGGAGAACATACAAAAGG
GCAGTTTTCAGGAAAGGAAACAAAATACTTAGAAGGTTTTCACTCATTTA
CTTATGGTTGCTACTACATGACAGAAATGCCTTTTTAAAAGGCTTTAATA
AAAAAATTAGTTAATGTGTAGATTTAACACTGGATGCACTGCTATACTTA
TGGCATTAAAGGAACAGAGCTATCCCAAAGATAGCACCACCCGAGGGATA
GAAAGATGCTACTAATGAGGATCAGTAAGAAAAGCCATTTTATTTTACAT
TCTGTATATGCTCTCAACACACTATTGAGTTCAGCAAATTACGAAAACTC
ACAGAAGGCACACTGAGATAATGAAGACATTGGGAAAGATGTTACTAAAC
AAAGCATGTTCCTCGCTTCCCATCAGCTCTAGGCTTGAAGTGCTCAGAAA
GAGATGCCAAAAAGATCTTTTTTTAACAAAACTGGATTTACTAAGAAGAT
ATGTAGGTACACTGTTAACAATAATCTCGATGCAGTGTTTTAAATTTTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_b07.g1 MSMg01no498_b07.g1 CHROMAT_FILE:
MSMg01no498_b07.g1 PHD_FILE: MSMg01no498_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:59 2005
         (589 letters)



>mm_chr3_45200942_45201930
          Length = 989

 Score = 1123 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaacaatagcaccactggagtgagcagatgaccacagatttgtcaaaaagggataa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 789 agaaaaacaatagcaccactggagtgagcagatgaccacggatttgtcaaaaagggataa 730

                                                                       
Query: 61  attgaaattttaagtaaattggatctgggtgtgagaaaaacaaaacaaaccaagagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 attgaaattttaagtaaattggatctgggtgtgagaaaaacaaaacaaaccaagagatta 670

                                                                       
Query: 121 gcaaaaatcctttcagaaatacttggctaataagtaagagaacttggaaaaaaaaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcaaaaatcctttcagaaatacttggctaataagtaagagaacttggaaaaaaaaggaga 610

                                                                       
Query: 181 acatacaaaagggcagttttcaggaaaggaaacaaaatacttagaaggttttcactcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acatacaaaagggcagttttcaggaaaggaaacaaaatacttagaaggttttcactcatt 550

                                                                       
Query: 241 tacttatggttgctactacatgacagaaatgcctttttaaaaggctttaataaaaaaatt 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacttatggttgcaactacatgacagaaatgcctttttaaaaggctttaataaaaaaatt 490

                                                                       
Query: 301 agttaatgtgtagatttaacactggatgcactgctatacttatggcattaaaggaacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agttaatgtgtagatttaacactggatgcactgctatacttatggcattaaaggaacaga 430

                                                                       
Query: 361 gctatcccaaagatagcaccacccgagggatagaaagatgctactaatgaggatcagtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctatcccaaagatagcaccacccgagggatagaaagatgctactaatgaggatcagtaa 370

                                                                       
Query: 421 gaaaagccattttattttacattctgtatatgctctcaacacactattgagttcagcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaaaagccattttattttacattctgtatatgctctcaacacactattgagttcagcaaa 310

                                                                       
Query: 481 ttacgaaaactcacagaaggcacactgagataatgaagacattgggaaagatgttactaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttacgaaaactcacagaaggcacactgagataatgaagacattgggaaagatgttactaa 250

                                                            
Query: 541 acaaagcatgttcctcgcttcccatcagctctaggcttgaagtgctcag 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 acaaagcatgttcctcgcttcccatcagctctaggcttgaagtgctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)