NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGAATTATTCACCATAATAACAGCTATCATGTGTAACAAT
TCAAATTTGAAGATTTGGAAACTGAGGCTAAGGTCAGGTCAGTGCTGTCC
CCTGGGCAACGGCTGTGCAGAGGAGCAACTGAAATATCTCGCCGACTGAC
TGTCCAGTACTTTTTTCATCACGCCATACTGCAGGACTCTAACAGCAAGC
TGTCGGCTTTTAAAATTTAAATTATGGTTCAGAAAAAAAAAACAGGGAAA
TAAATTTGCTATTTAGTTTTCAGAATCTCCTTATCTAACATTCCACATTC
TGGTGAAAAGCTATATAAAGGGAGTTAGGTAAGTTTTCGAGGAATGCTTC
TGAGCTGCTCGAAATGTTTGAACTGAGACTTTGTCTCAGACCTGATGCTC
CCTAATGCTCCACATTTGACAGATGCTTTAAATTTGTATCAAAGGTTTGG
GGAGGGAAAAAAAGAAATGGAGGGAGGGGAGAAGGGAACAGGCTAGAAAG
GAAGAGGAAGCAGCCTAGAGTTGGAAGGCTTTCAGGAAAAGTATGTTCCA
CACGATCTATCACTCCAGAAATAACTCACCGAAAGTTATCAAATGCACAG
GGAGCCGTATTCCTTTTAAACTATACTTTAAAAAATCTGTATTTTAATAA
TTTTGAGTGAACAATTATTTTTTTGTGTGAATTACTTTGGTAATTCGCCT
TTTCTTAAGACACGGCCACCTAATTTCCCCTTCCCA

NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGAATATATTTCTGTATATCT
ACATGTTTCACTTTCACTTAAGATATTTTCCTGCAAAGGTCCCCAATGAA
GGAGCCATAGAAATACCCAGGGNAGCTGAAAGGGACTGANGTCCCCATAG
AAGGACATCAGTATGAACTAACCAGTACCCCCAGAGCTCCTTTAAACTTT
TCCCCCATTCCAAAAAAAACCCGGGGGGGAATTGTGGGCTCCTGCCCTTA
TTTGTGTGGCAAAAAAGGGGCCCCCCCCCCTTTTTTTTTTTAAAAAGAAA
AACCCCCTTTTTCCTGGGGAACTCTTCTCCCCCCCCCCTTTTTGGGGGTG
TGTGTTCTCAAACCACAAGAGTTGGGGGGGGGGTGGTTTGTTAAACAACC
CCACATGGGGGGGTGTGGCTCTTTCTTTCTTTTCCCTTTTTCCCTCTCTC
CTTTTTTTTTCCTTCTCTCTCTTTCATTACTTTGTCTTTTGCTTTTTTTT
TTCTTTTTTTTTTTCCACTCTTTCTTGTTTTATTCTCCAGTTTTCTTTTC
CCCTTTTTTTTTTTTCCTATATTTTTCATTTTTTCCTTTTTCTTTCATAT
TCCTTTCTTCATTTCTTT

Query= MSMg01no498_c21.b1 MSMg01no498_c21.b1 CHROMAT_FILE:
MSMg01no498_c21.b1 PHD_FILE: MSMg01no498_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:06 2005
         (529 letters)



>mm_chr3_117869682_117870615
          Length = 934

 Score =  967 bits (500), Expect = 0.0
 Identities = 521/530 (98%), Gaps = 5/530 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaattattcaccataataacagctatcatgtgtaacaattcaaatttgaaga 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattcaagaattatgaaccataataacagctatcatgtgtaacaattcaaatttgaaga 675

                                                                       
Query: 65  tttggaaactgaggctaaggtcaggtcagtgctgtcccctgggcaacggctgtgcagagg 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 tttggaaactgaggctaaggtcaggtcagtgctgtcccctgggtaacggctgtgcagagg 615

                                                                       
Query: 125 agcaactgaaatatctcgccgactga----ctgtccagtacttttttcatcacgccatac 180
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 614 agcaactgaaatatctcgccgactgactgtctgtccagtacttttttcatcacgccatac 555

                                                                       
Query: 181 tgcaggactctaacagcaagctgtcggcttttaaaatttaaattatggttcag-aaaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 554 tgcaggactctaacagcaagctgtcggcttttaaaatttaaattatggttcagaaaaaaa 495

                                                                       
Query: 240 aaaacagggaaataaatttgctatttagttttcagaatctccttatctaacattccacat 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 aaaacagggaaataaatttgctatttagttttcagaatctccttatctaacattccgcat 435

                                                                       
Query: 300 tctggtgaaaagctatataaagggagttaggtaagttttcgaggaatgcttctgagctgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctggtgaaaagctatataaagggagttaggtaagttttcgaggaatgcttctgagctgc 375

                                                                       
Query: 360 tcgaaatgtttgaactgagactttgtctcagacctgatgctccctaatgctccacatttg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcgaaatgtttgaactgagactttgtctcagacctgatgctccctaatgctccacatttg 315

                                                                       
Query: 420 acagatgctttaaatttgtatcaaaggtttggggagggaaaaaaagaaatggagggaggg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acagatgctttaaatttgtatcaaaggtttggggagggaaaaaaagaaatggagggaggg 255

                                                             
Query: 480 gagaagggaacaggctagaaaggaagaggaagcagcctagagttggaagg 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagaagggaacaggctagaaaggaagaggaagcagcctagagttggaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 934
Length adjustment: 10
Effective length of query: 519
Effective length of database: 924
Effective search space:   479556
Effective search space used:   479556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)