NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACACAATCTGCATATTTTATATGGTTCTCTCAATGAAAAACCAA
GCCTTTAACAAACCAGAACACTAACTTGAGTGCTTTACTGCATTAGAGTA
AAACAGAAGGTAAGACATCTAGTTCAACTTGAGAAACAAATGGTTTAACT
ATAAAAACACTTTAGTCATTTCTCTCCTGTTTTCACAGTAAAATTATGTC
TTCCCTTATCTCTACTGTCATTTTTATAATACTGGATGAATAAAAATAAC
AGGGACTTAAATTATGTATTTAGTTATATTATTAAATTCAAGTGCCTTTG
AATTAAAAACTACCAATAAAGGCATCAAAGAAAGAGATGCTTGTCCCACT
GATTTAGTCTAAAGATTACACTTTCCATTTTCTTTTTCACGTAGAGGAAG
TCACAGGAACAAAGGTGAATCTCTTTTATTGGTACATATTTCTCTTACAT
AACTTTTTCCTGCTTTACTTATAAGTGCCGATATTAAATATACTGAAAAC
AGTTATTCATTTAGAAAACTTACCTTGTAAGTTATGTTTCTTGATGTGTA
ACTTCCTAGACATCCAGCAGACTAGCCNAGCCTTTGTCACCGTTTTCTGC
AAAATGAGGACTTTTTCATTTCAAAGGAGAAGAGCNACATGCCTATCACT
TCTCTCTCTCTCATCCTTATCACAATGTGCCTTACAGCAACACTCACTAC
ACCAGGCTTTTATGAGGGGCTCGTCGAGAATCTTTTAGTGGCATGCTGCT
N

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCA
GAGAAGTACCTGAAAAAAAAATATTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACTCTGAGATTCCACCTCACACCAGTCAGTATGGCTA
AGATGAAAAATTCAGGTGACAGCAGATGCTATCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTGTG
GAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATGGTAATACCAAAGG
ATCCCGCAATACTTCTCCTGGGTATATACCCAGAAGATGTCCCATCCGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTCATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACCCAATCACCAAGGGACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAGAAACTTANGATACCCATGATACAAGATACAA
TTTTGCTAACGCATGAAACTCAAGAAGAAACGAAGAGACACTTTGCCCCT
TCCTAGAATTGGGACAAAACACCCATGGAANGTGTACAGACAAAGNTGTA
GCTGGACCAAGTAT

Query= MSMg01no498_k21.b1 MSMg01no498_k21.b1 CHROMAT_FILE:
MSMg01no498_k21.b1 PHD_FILE: MSMg01no498_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:49 2005
         (547 letters)



>mm_chr3_139295972_139296920
          Length = 949

 Score = 1027 bits (531), Expect = 0.0
 Identities = 541/545 (99%), Gaps = 2/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacaatctgcatattttatatggttctctcaatgaaaaaccaagcctttaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattcacacaatctgcatattttatatggttctctcaatgaaaaaccaagcctttaaca 690

                                                                       
Query: 65  aaccagaacactaacttgagtgctttactgcattagagtaaaacagaaggtaagacatct 124
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 689 aaccagaacactaacttgagtactttactgcattagagtaaaacagaagggaagacatct 630

                                                                       
Query: 125 agttcaacttgagaaacaaatggtttaactataaaaacactttagtcatttctctcctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agttcaacttgagaaacaaatggtttaactataaaaacactttagtcatttctctcctgt 570

                                                                       
Query: 185 tttcacagtaaaattatgtcttcccttatctctactgtcatttttataatactggatgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttcacagtaaaattatgtcttcccttatctctactgtcatttttataatactggatgaa 510

                                                                       
Query: 245 taaaaataacagggacttaaattatgtatttagttatattattaaattcaagtgcctttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taaaaataacagggacttaaattatgtatttagttatattattaaattcaagtgcctttg 450

                                                                       
Query: 305 aattaaaaactaccaataaaggcatcaaagaaagagatgcttgtcccactgatttagtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aattaaaaactaccaataaaggcatcaaagaaagagatgcttgtcccactgatttagtct 390

                                                                       
Query: 365 aaagattacactttccattttctttttcacgtagaggaagtcacaggaacaaaggtgaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaagattacactttccattttctttttcacgtagaggaagtcacaggaacaaaggtgaat 330

                                                                       
Query: 425 ctcttttattggtacatatttctcttacataact--ttttcctgctttacttataagtgc 482
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 329 ctcttttattggtacatatttctcttacataactctttttcctgctttacttataagtgc 270

                                                                       
Query: 483 cgatattaaatatactgaaaacagttattcatttagaaaacttaccttgtaagttatgtt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cgatattaaatatactgaaaacagttattcatttagaaaacttaccttgtaagttatgtt 210

                
Query: 543 tcttg 547
           |||||
Sbjct: 209 tcttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 949
Length adjustment: 10
Effective length of query: 537
Effective length of database: 939
Effective search space:   504243
Effective search space used:   504243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)