Query= MSMg01no499_b13.b1 MSMg01no499_b13.b1 CHROMAT_FILE:
MSMg01no499_b13.b1 PHD_FILE: MSMg01no499_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:24 2005
(377 letters)
>mm_chr3_55104157_55104933
Length = 777
Score = 656 bits (339), Expect = 0.0
Identities = 368/379 (97%), Gaps = 4/379 (1%)
Strand = Plus / Plus
Query: 1 cctcttgagtgtactgcccctggccatcacagagttgaacacactgcccccagccctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcttgagtgtactgcccctggccatcacagagttgaacacactgcccccagccctcca 260
Query: 61 gcctcacacacttttatgcctttctactacagtggctagttttgagaatttgactcattc 120
|||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 261 gcctcagacacttttatgcctttctactaaagtggccagttttgagaatttgactcattc 320
Query: 121 acctgtgctcccctctttgttcttccgaaactgtgtggctttcttctttattgccgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgtgctcccctctttgttcttccgaaactgtgtggctttcttctttattgccgtgtg 380
Query: 181 cataggaatgcatatgtggccatcaaaatcccagtgctgtagctgccaatttctgactca 240
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 381 cataggaatgcatatgtggccatcaaaatcccactgctgtagctgtcaatttctgactca 440
Query: 241 tgtctccatgcctgctacttatagatgtggaca--cttgctctactagacaaatgttttc 298
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 441 tgtctccatgcctgctacttatagatgtgggcaagc--gctctactagacaaatgttttc 498
Query: 299 tatgcttctacttcctcatctcttgcacacagaatggttcctcccctctgctggttttca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 499 tatgcttctacttcctcatctcttgcacacagaatggttcctcccctctgctgtttttca 558
Query: 359 gcatggacctctttgagaa 377
|||||||||||||||||||
Sbjct: 559 gcatggacctctttgagaa 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_b13.g1 MSMg01no499_b13.g1 CHROMAT_FILE:
MSMg01no499_b13.g1 PHD_FILE: MSMg01no499_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:24 2005
(599 letters)
>mm_chr3_55252384_55253382
Length = 999
Score = 1033 bits (534), Expect = 0.0
Identities = 581/600 (96%), Gaps = 8/600 (1%)
Strand = Plus / Minus
Query: 1 tctccttaaattatttcttaaaaatgtacctttctgtgtttgtgaatgagtacctgcttg 60
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 980 tctccttaaattatctcttaaaaatgtacctttctgtgtttgtga------acctgcttg 927
Query: 61 cctgtatgcccaccatatgcatgcagtgcccatggagaccagaagagggcactggatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 cctgtatgcccaccatatgcatgcagtgcccatggagaccagaagagggcactggatctc 867
Query: 121 ctggatctcgagtgaccaatggttgtgatctgccatgtgctctgctgggaactcaaccac 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 866 ctggatctcgagtgaccaatggttgtgatctgccatgtggtctgctgggaactcaaccat 807
Query: 181 taactgttaagtcattcctccagctcccataaattcttaaaaagtccttgtcctctattt 240
|||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 806 taacggctaagtcattcctccaactcccataaattcttaaaaagtccttgtcctctattt 747
Query: 241 ggtgtctctattcttatcatgctttcattagcatatgatca-tttttttttctgatctct 299
|||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 746 ggtgtctc-actcaaatcatgctttcattagcatatgatcattttttttttctgatctct 688
Query: 300 tgtgctttagcgttattgttctaatttatttttggaatttttctaagcaaaattaagata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgtgctttagcgttattgttctaatttatttttggaatttttctaagcaaaattaagata 628
Query: 360 tcattgcttaagatctgaagtgggtttgttgccaacaatgttgcagcttttgtttttgtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcattgcttaagatctgaagtgggtttgttgccaacaatgttgcagcttttgtttttgtt 568
Query: 420 ttcttacacacatagtcattatgtgtatttcttcttttccaaggacctatttctgggctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttcttacacacatagtcattatgtgtatttcttcttttccaaggacctatttctgggctt 508
Query: 480 tgcttgcttgaggttgagtaaacctttcttttattggcttgtaagaatacatgctttata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgcttgcttgaggttgagtaaacctttcttttattggcttgtaagaatacatgctttata 448
Query: 540 ttaaacttttattctttagtctgtcatgcataaaatgatattagtagcatatttctcttt 599
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 447 ttaaacttttattctttagtctatcatgcataaaatgatattagtaacatatttctcttt 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
