Query= MSMg01no499_i17.b1 MSMg01no499_i17.b1 CHROMAT_FILE:
MSMg01no499_i17.b1 PHD_FILE: MSMg01no499_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:57 2005
(587 letters)
>mm_chr3_136597956_136598943
Length = 988
Score = 891 bits (461), Expect = 0.0
Identities = 480/489 (98%), Gaps = 8/489 (1%)
Strand = Plus / Minus
Query: 107 gttctatggaaagaagggcattcaagcaaactaaagaaacctgaggtaagcatgatctat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gttctatggaaagaagggcattcaagcaaactaaagaaacctgaggtaagcatgatctat 929
Query: 167 acaaaattaaactgtcatatttttt----ttttttattttttggcattttaacaaatttg 222
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 928 acaaaattaaactgtcgtatttttttttattttttattttttggcattttaacaaatttg 869
Query: 223 caacattcttttttttccagg-tttttttttctttttcttttctttttttcttttttctt 281
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 868 caacattcttttttttccaggttttttttttctttttcttttctttttttcttttttctt 809
Query: 282 tttttc--ttttttttttttaagactgcctaattcagtttatagccattgtctgacagga 339
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tttttcttttttttttttttaagactgcctaattcagtttatagccattgtctgacagga 749
Query: 340 gtagcaaaacattatcaataaatagtccttagttagtttttacatc-ttttttttttctg 398
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 748 gtagcaaaacattatcaataaatagtccttagttagtttttacatctttttttttttctg 689
Query: 399 ttaaaaatgtttgatgtcttccattttagtgctgcgactgtaaacgtacaatagagtata 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttaaaaatgtttgatgtcttccattttagtgctgcgactgtaaacgtacaatagagtata 629
Query: 459 agaaattagacaaagttttcgtgtccagtaacagaataaaaggcctttcattaacctatc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agaaattagacaaagttttcgtgtccagtaacagaataaaaggcctttcattaacctatc 569
Query: 519 taaaagtccccagtgcagtaggaaaacgcgttcattcccctaacattgcagtatagacta 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 taaaagtccccagtgcagtaggaaaacgcgttcattcccctaacattgcagtatagacta 509
Query: 579 gcattagct 587
|||||||||
Sbjct: 508 gcattagct 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_i17.g1 MSMg01no499_i17.g1 CHROMAT_FILE:
MSMg01no499_i17.g1 PHD_FILE: MSMg01no499_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:57 2005
(638 letters)
>mm_chr3_136437437_136438475
Length = 1039
Score = 1098 bits (568), Expect = 0.0
Identities = 631/676 (93%), Gaps = 39/676 (5%)
Strand = Plus / Plus
Query: 2 ataattctttagcagttcaaacaatacaaccggagaagttcttttgtactgttacatgtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ataattctttagcagttcaaacaatacaaccggagaagttcttttgtactgttacatgtt 223
Query: 62 atgtaattctttaccagcatatctggggatgggggctttatagtgcatattgaatagtca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atgtaattctttaccagcatatctggggatgggggctttatagtgcatattgaatagtca 283
Query: 122 ctttactctaggtgtgttctacttttaagagggctttaattaaaagaaaaatcaagcatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctttactctaggtgtgttctacttttaagagggctttaattaaaagaaaaatcaagcatt 343
Query: 182 gggtaataaattttaattttcagcatggctggttcagtgtagtatttaatttccctttca 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gggtaataaattttatttttcagcatggctggttcagtgtagtatttaatttccctttca 403
Query: 242 aaattgtgtttgtgtgtgtgtg--------tgtgtgtgtatgtgtgt------------- 280
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 404 aaattgtgtttgtgtgtgtgtgcgtgtatgtgtgtgtgtatgtgtgtatgtgtgtgtgtg 463
Query: 281 -----------------gtgcgtgtctgtgtctgtgtgtctgtgtgtctgtgtttgggac 323
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtgtgtctgtgtgtctgtgtttgggac 523
Query: 324 tttgagaatttcttttaggagtccattcctgattaatcttaacatagcctttgtcattaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttgagaatttcttttaggagtccattcctgattaatcttaacatagcctttgtcattaa 583
Query: 384 atatataatctgacattttgtactaaggaatttttttcttgtttttctctctgtcctgtc 443
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atatataatcttatattttgtactaaggaatttttttcttgtttttctctctgtcctgtc 643
Query: 444 actctacattattaatagattgacagatcgttaaataaatgttcttgcagtatatattta 503
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 644 actctacattattactagattgtcagatcgttaaataaatgttcttgcagtatatattta 703
Query: 504 ggaaaaaaa-tagtataatgtcatggaatatgccctcaccctctttgtatatgtgtataa 562
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggaaaaaaaatagtataatgtcatggaatatgccctcaccctctttgtatatgtgtataa 763
Query: 563 tatgcctgtgtatgtgtgcctctgtgtgtgtacaatccccgaggacaattttgagcattg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tatgcctgtgtatgtgtgcctctgtgtgtgtacaatccccgaggacaattttgagcattg 823
Query: 623 ttcgcaggcactgtcc 638
||||||||||||||||
Sbjct: 824 ttcgcaggcactgtcc 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
