GAGTCACTATATCGAGAGGAGGCGCGGAATTCCACATCATCTCAGCATCC
GTATGTAGTCATCCTGAACACAAGCATAGAAACACTGTGAGCCAACTGCA
GGCTCCACCTTTACAAATACCTTATGTTTGGCTCAGCAATGACTTTCCCC
CGGGAACCCTTTGAGACATGAGTCCCCTCCACTTCCCCTTCCACGAAACT
CACTGCATTTTTGCACTTTGCATGGACGTCCTGCTCACAGATCACATAGG
TCTAGTCCCCAGTAAGCAGGGAAAGCTCTCCTTGGTCTTTGGATGCTCTC
TGTAGCCCAGTGCTTTGATTCTATGCTGTTGTGTGAATTCATTCCAGGAC
AGTTCTCCTTACAAAGTACAGTAGTGCTAAACTGACATCACCCTCTAAGG
TGGCATCCAAGCAAAACTCTTTACAGAGTGAAGAGAAAGCCTACAAAATA
AGATCAAGTACTTGAAAACCTTATCAGGAACTAATATCCAAATGGTATGT
AAGAATTTGAAAAACTCACTACAAGACAGTAATAACTCAATTTGTATACC
ATGCAGCCATCGGAAATGATAAGACAAAGAAGATGGGATAAAATGGAGTG
GCCATCTTTCTTTCTAAATGCTAGTTCATTTTTTTTTTTGTATATAAATC
CCCTATGTTTCCT

NCGACGGGNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNCCNNNNNNNNN
NNNNNNNNNNNNNNTTTCACACCCGNNNNNNNNNNNNNTCCAAAAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAGAAGGAAG
GNNNTNTANNNNNNNNNNNNNNNNNNNNNNAANNGNAANAGAGGGGGGGG
ACGGGGGGGGGGGGGAGGGAGGAGGGGGAAGGGGGGCGCACGGCGGGGGA
GGGCGCGCCGGCGCGGGGCCGCCGCCCGAGGCGCGGGGCGGGGTNNNNNN
NNNNNNNTTTTTTTTNNNNNNNNNNNNNNNNNTNNNNNNNNNNNTTNTNN
NNNNNNNNNNNNNNNNNNNNNNNNTNTTNNTTTTTTTTTTCCCCTTTTTC
CNNCCNNNNTNTTNNNTTTTCCCNNNNNNNNNTTNNNNNNTTNNNNTTNT
NNTNTTNNTTTTTCCCCCCCNNNNNNNNNNTTCNNTNTNTNCTNNNNNTT
CCCTCTCCCCTTTTNNNNTNNTTCCCTNCCCCCCCTTNTCCCCTNCCCNN
NNCCTTNCTTTCCTTTTTTTCCCCCCCTTTTTTTTCCCCTCCCNTCCNCN
NCNTCTTTCCTCCCCCCCCCNCCCTCCTTTTCCCCCCTCTCTTCCTCTCN
CCTCTCTCTTCCCCCCCCAACCCAACCCCCCCCG

Query= MSMg01no499_i20.b1 MSMg01no499_i20.b1 CHROMAT_FILE:
MSMg01no499_i20.b1 PHD_FILE: MSMg01no499_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:57 2005
         (612 letters)



>mm_chr3_52586955_52587964
          Length = 1010

 Score = 1089 bits (563), Expect = 0.0
 Identities = 569/571 (99%), Gaps = 2/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtagtcatcctgaacacaagcatagaaacactgtgagccaactgcaggctccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tatgtagtcatcctgaacacaagcatagaaacactgtgagccaactgcaggctccacctt 510

                                                                       
Query: 61  tacaaataccttatgtttggctcagcaatgactttcccccgggaaccctttgagacatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tacaaataccttatgtttggctcagcaatgactttcccccgggaaccctttgagacatga 450

                                                                       
Query: 121 gtcccctccacttccccttccacgaaactcactgcatttttgcactttgcatggacgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtcccctccacttccccttccacgaaactcactgcatttttgcactttgcatggacgtcc 390

                                                                       
Query: 181 tgctcacagatcacataggtctagtccccagtaagcagggaaagctctccttggtctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgctcacagatcacataggtctagtccccagtaagcagggaaagctctccttggtctttg 330

                                                                       
Query: 241 gatgctctctgtagcccagtgctttgattctatgctgttgtgtgaattcattccaggaca 300
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gatgc-c-ctgtagcccagtgctttgattctatgctgttgtgtgaattcattccaggaca 272

                                                                       
Query: 301 gttctccttacaaagtacagtagtgctaaactgacatcaccctctaaggtggcatccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gttctccttacaaagtacagtagtgctaaactgacatcaccctctaaggtggcatccaag 212

                                                                       
Query: 361 caaaactctttacagagtgaagagaaagcctacaaaataagatcaagtacttgaaaacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 caaaactctttacagagtgaagagaaagcctacaaaataagatcaagtacttgaaaacct 152

                                                                       
Query: 421 tatcaggaactaatatccaaatggtatgtaagaatttgaaaaactcactacaagacagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tatcaggaactaatatccaaatggtatgtaagaatttgaaaaactcactacaagacagta 92

                                                                       
Query: 481 ataactcaatttgtataccatgcagccatcggaaatgataagacaaagaagatgggataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ataactcaatttgtataccatgcagccatcggaaatgataagacaaagaagatgggataa 32

                                          
Query: 541 aatggagtggccatctttctttctaaatgct 571
           |||||||||||||||||||||||||||||||
Sbjct: 31  aatggagtggccatctttctttctaaatgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space:   602000
Effective search space used:   602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)