BAC Information

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BAC

Clone NameMSMg01-499I23
Chromosome3 (Build37)
Map Location 61,790,442 - 61,790,953
singlet/doubletsinglet
Overlap geneLOC669910
Upstream geneP2ry1, Rap2b, LOC666891
Downstream geneLOC676965, 4631416L12Rik, Dhx36, Gpr149, LOC676984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499I23.T7 (MSMg01no499_i23.b1)MSMg01-499I23.TJ (MSMg01no499_i23.g1)
ACCAG575613AG575614
length731712
length of high quality
(start - end)
696 (36 - 731)529 (58 - 586)
definitionCHROMAT_FILE: MSMg01no499_i23.b1 PHD_FILE: MSMg01no499_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:58 2005CHROMAT_FILE: MSMg01no499_i23.g1 PHD_FILE: MSMg01no499_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGG
GCCTACCGAAGAAACCTGTCTCAGTGGGATTTCCTAACTTTTCTCATGGT
AAACCCTTATTTGGATAAGACTGTCTTTTCTGTCCTAGTAAACAGACTAG
CCCTGAGGTGTTGGCTCCATCTTTTGTAATGCTAATTAGTTACTGAATAG
GTAACTTCTTTGCTGAATTCCTACTGAATTCTCAGTAGCCAGTTTACAGG
GTCTTTCTAGGGTGTTGGAACACTGGCGAAGACTAACTGTATCAGGATAC
AATTTTAAAAAGCAGTATAGTAAGATAACACTAAAGGAGAGTACATGGAT
CCTCCTTAACAGCCTTGGGTGACAGGCAGGGAACAGAGAGGAGGGGGTGA
CTACCAGCTCCATAGTACAAGGCCATTTGGCTTGTTAGGGTGGGAGTCTG
TGAAGGGCTTGCCCTTTTCATGGTATGGTCTCCAACCTCTCTCCCCCCTT
TGGATTAAATTTAATAAGGCCACACTTAACTGAGGTGATCAAATGATCTT
CTCATCCTTGGATGAGTGGGCATTAACCATGGCTGGGGGAGCATTGACTC
GATTCCTCCCGTGGGTGTTGTCATGACCCACAATCATGGCTCTTGGTATC
TTTGGGGGAGGGGAGGCAGAGCCTTAAAGATACTTTTGGTTGTAACTGGA
ACTAGATACCAACCTCCATCCAAACTGGGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTGTGTAGTTCTGTTCCCCATTTTTTAATAGGATTATTTGGT
TCTTCTTCTTTTGTTCTCAAAAAACCATCAATGTGAATGTAGATGTCCTT
CTACAGAGAAATGGATACAGAAAATGTGGTACATTTACTCAATGGAGTAC
TACTCAGCTATTAGAAATGTTGAATTCATGAAATTCTTAGGCAAATGAAT
GGAACTAGAAAATGTCATCCTGAGAAATGAAGAACAATGCCCTGAATTCC
TTCCACAGAAAAGCACATGACTGGCAAGTGATCGTACCAATCATTGATGA
GGTTCTTATAGAATTCATCTTATTCCTCTTGAGTGACGTTATCAGGTTTT
CTCATCAAAATAGGCTGAGTCTTATTCAACTCTTCCAGTTCAGTGTATTT
CTCCTTAAAGATCTTTGTTTTCTTTTTCCTATCCTTGCCACTGTCACCCT
TCTTATCTGATCCCACATCTTCAATCTTAGGTTTTTCCTCATTATCATTA
TTTTTCTCCTCTTTCTTACCTTTCTTTCCCTGTGGTTGAATTAGGGAAAA
GCTGAAAGAAGCTGAGGAGGAGAGTGACCCCATAGGAAGCCCAGTAGCCT
CAAGTAACTGGATCTCTCAAACACGGAGTCACCAACTAGGCAGCATACAC
TAGCTGATATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_i23.g1 MSMg01no499_i23.g1 CHROMAT_FILE:
MSMg01no499_i23.g1 PHD_FILE: MSMg01no499_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:58 2005
         (529 letters)



>mm_chr3_61790025_61790953
          Length = 929

 Score =  944 bits (488), Expect = 0.0
 Identities = 506/512 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  cccattttttaataggattatttggttcttcttcttttgttctcaaaaaaccatcaatgt 77
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cccattttttaatagggttatttggttcttcttcttttgttctcaaaaaaccatcaatgt 870

                                                                       
Query: 78  gaatgtagatgtccttctacagagaaatggatacagaaaatgtggtacatttactcaatg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaatgtagatgtccttctacagagaaatggatacagaaaatgtggtacatttactcaatg 810

                                                                       
Query: 138 gagtactactcagctattagaaatgttgaattcatgaaattcttaggcaaatgaatggaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gagtactactcagctattagaaatgttgaattcatgaaattcttaggcaaatgaatggaa 750

                                                                       
Query: 198 ctagaaaatgtcatcctgagaaatgaagaacaatgccctgaattccttccacagaaaagc 257
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 749 ctagaaaatgtcatcctgagaaatgaagaacaatgccccgaattccttccacagaaaagc 690

                                                                       
Query: 258 acatgactggcaagtgatcgtaccaatcattgatgaggttcttatagaattcatcttatt 317
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acatgactggcgagtgatcgtaccaatcattgatgaggttcttatagaattcatcttatt 630

                                                                       
Query: 318 cctcttgagtgacgttatcaggttttctcatcaaaataggctgagtcttattcaactctt 377
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 629 cctcttgagtgacgttatcaggttttctcatcaaaatagactgagtcttattcaactctt 570

                                                                       
Query: 378 ccagttcagtgtatttctccttaaagatctttgttttctttttcctatccttgccactgt 437
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccagttcaatgtatttctccttaaagatctttgttttctttttcctatccttgccactgt 510

                                                                       
Query: 438 cacccttcttatctgatcccacatcttcaatcttaggtttttcctcattatcattatttt 497
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 caccctccttatctgatcccacatcttcaatcttaggtttttcctcattatcattatttt 450

                                           
Query: 498 tctcctctttcttacctttctttccctgtggt 529
           ||||||||||||||||||||||||||||||||
Sbjct: 449 tctcctctttcttacctttctttccctgtggt 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)