BAC Information

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BAC

Clone NameMSMg01-499K11
Chromosome3 (Build37)
Map Location 13,158,766 - 13,159,445
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499K11.T7 (MSMg01no499_k11.b1)MSMg01-499K11.TJ (MSMg01no499_k11.g1)
ACCAG575684AG575685
length760686
length of high quality
(start - end)
675 (48 - 722)376 (303 - 678)
definitionCHROMAT_FILE: MSMg01no499_k11.b1 PHD_FILE: MSMg01no499_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:05 2005CHROMAT_FILE: MSMg01no499_k11.g1 PHD_FILE: MSMg01no499_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTACTGTTTCCTAACGATATTACTGGGGAACATGGACAGGTA
CAATGTATGTATTTAATGGACATTACTGATTTATTATTAAATATCGGACA
GCATTTGAAATGATACTGAAAATTTGAGACTACTATTCATGTTACTGTGA
ACTCTCCTACATACAGATCTTTCTGGAAATGGGTGAGGACTGCCAGTCAT
CTCACAAGCTTTCCAATTTGAAATAAACTGGGTTTATGTATTTCTTAGCT
ATGACAGGAAGCATAGCAAGACGTATGTGTCATAGTTACTTACATGGGTC
ACCACCATCAGTGATAGTACCATTGAAAGTTTAGCAACAACACAAACTAT
AAAATAGAATCTTGTATATATGACATATAAACTCTATGCATCTCTCATTT
GCTCTGAGACATTGGGATTGAGCAGTATTTTGATCTTCCAACCTTTAATA
GTAATGATTATTTTCAAATTCTGACTATGAGAAAAGTTTTAACATGGTAT
AAAGTATTAGATGATAATTGAATTTATACAATTTCTACCTATGCATTAAA
CCTTAGAGGAATAATTAATTTTTTTCTTTCACAGGTGCACACACACACAG
ACCACACACTAACACACTCACACATATGCACATACTCACTAAAATGCTCA
TCACTGAGACCTCATGTCAGTAACCCACCAGATCCACAAAGTCTAGGATT
TTAGAGTCTN
GCCGGGTTTTCAAAAAGXXXXXXXXXXXXXXXXXXXXXXCAAAAAAACCG
TACAACCCCATGGGACAAGGAATAGTTGAACGTGCTCATCGCACCTTAAA
GAATTGGCTTTTTAAAACAAAAGAGGGGCAGCTATATCCCCCAAGGTCAG
CAAAGGCCCACCTTGCCTTCACCTTATTTGTCCTAAATTTCTTGCACACC
GATATCAAAGGCCAGTCTGCAGCGGATTGTCACTGGCATCCAGTTACTTC
TAATTCTTATGCATTGGTAAAATGGAAGGACCCCCTGACTAATGANATGA
AGGGTCCAGATCCAGTTCTAATTTGGGGTAGGGACTCAGTTTGTGTTTTT
TCACGAGATGAAGATGGAGCGCGGTGGCTGCCAGAAAGATTAATTCGTCA
GATGAACACAGATTCTGACTCTTCTGGTAAGTATCATTCTAAAGACTAAA
ATTCCTTTTGTGCTTAAAATTCAGCTGAGAGCAAAAGCTCCCAAAGCTGT
TCTCCAGCTACTCTCTGAGCCAGCTCCCCGACAGGAGGCCGGAGACTAGC
CTCAGCTTTACAATTTGCATTTGAATAAAGTACCTGGACTTCCCCAAAAG
AAGTTCTGCTTTCCTACTTTCTCACTGTCGAAATTTTGTCTTTCAAGCAG
GTAAATCAACATTCTTGAGCCGGACCAGCGGATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_k11.b1 MSMg01no499_k11.b1 CHROMAT_FILE:
MSMg01no499_k11.b1 PHD_FILE: MSMg01no499_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:05 2005
         (675 letters)



>mm_chr3_13158562_13159636
          Length = 1075

 Score = 1166 bits (603), Expect = 0.0
 Identities = 658/685 (96%), Gaps = 19/685 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattactgtttc--ct-aacgatattactggggaacatggacaggtacaatgtat 61
           |||||||||||||   |  || ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattactg---caacttaacgatattactggggaacatggacaggtacaatgtat 261

                                                                       
Query: 62  gtatttaatggacattactgatttattattaaatatcggacagcatttgaaatgatactg 121
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 262 gtatttaatggacattactgatttattattaaatatcagacagcatttgaaatgatactg 321

                                                                       
Query: 122 aaaatttgagactactattcatgttactgtgaactctcctacatacagatctttctggaa 181
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 aaaatttgagactactattcatgttactgtgagctctcctacatacagatctttctggaa 381

                                                                       
Query: 182 atgggtgaggactgccagtcatctcacaagctttccaatttgaaataaactgggtttatg 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 382 atgggtgaggactgccagtcatctcacaagctttccaatttgaaataaactgagtt-atg 440

                                                                       
Query: 242 tatttcttagctatgacaggaagcatagcaagacgtatgtgtcatagttacttacatggg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttcttagctatgacaggaagcatagcaagacgtatgtgtcatagttacttacatggg 500

                                                                       
Query: 302 tcaccaccatcagtgatagtaccattgaaagtttagcaacaacacaaactataaaataga 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tcaccaccatcagtgatagtaccattgaaagtttagcaacaacacaaactataaaacaga 560

                                                                       
Query: 362 atcttgtatatatgacatataaactctatgcatctctcatttgctctgagacattgggat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttgtatatatgacatataaactctatgcatctctcatttgctctgagacattgggat 620

                                                                       
Query: 422 tgagcagtattttgatcttccaacctttaatagtaatgattattttcaaattctgactat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagcagtattttgatcttccaacctttaatagtaatgattattttcaaattctgactat 680

                                                                       
Query: 482 gagaaaagttttaacatg-----------gtataaagtattagatgataattgaatttat 530
           ||||||||||||||||||           |||||||||||||||||||||||||||||||
Sbjct: 681 gagaaaagttttaacatgtgtatgctaaggtataaagtattagatgataattgaatttat 740

                                                                       
Query: 531 acaatttctacctatgcattaaaccttagaggaataattaatttttttctttcacaggtg 590
           ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct: 741 acaatttctacctatgcattaaaccttagaggaataatttatttttt-ctttcacaggcg 799

                                                                       
Query: 591 cacacacacacagaccacacactaacacactcacacatatgcacatactcactaaaatgc 650
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tacacacacacagaccacacactaacacactcacacatatgcacatactcactaaaatgc 859

                                    
Query: 651 tcatcactgagacctcatgtcagta 675
           |||||||||||| ||||||||||||
Sbjct: 860 tcatcactgagatctcatgtcagta 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)