Query= MSMg01no499_k16.b1 MSMg01no499_k16.b1 CHROMAT_FILE:
MSMg01no499_k16.b1 PHD_FILE: MSMg01no499_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:06 2005
(420 letters)
>mm_chr3_46634577_46635396
Length = 820
Score = 766 bits (396), Expect = 0.0
Identities = 414/420 (98%)
Strand = Plus / Minus
Query: 1 attagaacttcacttgccactatgtcagactgcaattctacagattgaaaaagagatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 attagaacttcacttgccactatgtcagactgcaattctacagattgaaaaagagatcac 521
Query: 61 agagaatactatgtttgactgacaccaagagatgctttcaaatgccatcagctagcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agagaatactatgtttgactgacaccaagagatgctttcaaatgccatcagctagcagcc 461
Query: 121 tgcacaaactgtgtgtctttcaatagctcagctataaagaacattttacatactctgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgcacaaactgtgtgtctttcaatagctcagctataaagaacattttacatactctgtaa 401
Query: 181 acttttatccaaagttcatcttatcttccatgaatatctgcctccttcttccatgtttcc 240
|| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 400 acctttatccaaagttcaacttatcttccatgaatatctgcctccttcttccgtgtttcc 341
Query: 241 tttattaattcaatatacatttaatgggttacctctataagctgagcgtttcattccatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttattaattcaatatacatttaatgggttacctctataagctgagcgtttcattccatg 281
Query: 301 ttaaggatatcaataaaaaaagaataaattactatttactgaaaaaaggatatctactgc 360
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 280 ttaaggatagcaataaaaaaagaataaatcactatttactgaaaaaaggatatctactgc 221
Query: 361 ctatcacagggtaatacttcgttcattttataaaataattaatattgatatatgtgtgta 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctatcacagggtaatacttccttcattttataaaataattaatattgatatatgtgtgta 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_k16.g1 MSMg01no499_k16.g1 CHROMAT_FILE:
MSMg01no499_k16.g1 PHD_FILE: MSMg01no499_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:06 2005
(663 letters)
>mm_chr3_46516075_46517137
Length = 1063
Score = 1158 bits (599), Expect = 0.0
Identities = 649/667 (97%), Gaps = 5/667 (0%)
Strand = Plus / Plus
Query: 1 ttagaattttgtgttttagtacggtgtattgaacttggatcctggcacatgctaggtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttagaattttgtgttttagtacggtgtattgaacttggatcctggcacatgctaggtagt 257
Query: 61 gctctgttactgagctaaatccccattagactttttcctcttcaa--tcgttagattcat 118
||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||
Sbjct: 258 gctctgttactgagctaaatccccattccactttttcttcttcaagat-gttagattcat 316
Query: 119 gtttatctcattgcctagactggccctcttacatgtatctgtttcctc--caaggtagaa 176
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 317 gtttatctcattgcctagactggccctcttacatgtatctgttacatgtacaaggtagaa 376
Query: 177 acattccatcctgcctgcagactaaccagtgttctccaggtccccaaatttgtgagctgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acattccatcctgcctgcagactaaccagtgttctccaggtccccaaatttgtgagctgt 436
Query: 237 cacacatgcctttagtccgtgttataatatagataagcctcaggtttctagtctttcctg 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cacacatgccttcagtccgtgttataatatagataagcctcaggtttctagtctttcctg 496
Query: 297 cgtctacctcctaagcagcttagttgacagggttttactagtagagcaaataaattttta 356
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 497 cgtctacctcctaagcagcttagttgacagggttttactactagagcaaataatttttta 556
Query: 357 gaaacttaaatccaatgtaaatttagttttctagataaagtttttatgtaaatttaatat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaaacttaaatccaatgtaaatttagttttctagataaagtttttatgtaaatttaatat 616
Query: 417 tcatttgaaaaaccttttacttaaactgcttagaataaaaaattgtagtatgatagaatt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcatttgaaaaaccttttacttaaactgcttagaataaaaaattgtagtatgatagaatt 676
Query: 477 tttccttttgtatgttagaacacaccctcatttacatggaatattgatcacacaatagtg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttccttttgtatgttagaacacaccctcatttacatggaatattgatcacacaatagtg 736
Query: 537 atgttcataagagagttctatacaatatgtcattgctacatagaatgtaaccctcaccct 596
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 737 atgttcataagagagttttatacaatatgtcattgctacatagaatgtaatcctcaccct 796
Query: 597 tggaattagttgtggatgatggttctatacaggatagagaatgacctataaaagtcatgt 656
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 797 tggaattagttgtggatgatggttctgtacaggatagagaatgacctataaaagtcttgt 856
Query: 657 ttctaat 663
|||||||
Sbjct: 857 ttctaat 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
