XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAATGCGCGGAATTCCTGC
TTTCTCCCTCTAGGGATGGAGAAACTGATTTCAACAAGTAGAGTTGTTTC
AAGGGTCAGGTTTGCAGACCTGTTTTACTTTTTACTTTTTCATTATGTGA
CAGGCAAGCAGCTCAGAAAGATAAGAAAGGACAAGAGTATCACATAATTT
TTAAGAAGAAAAGATAGGAAATGATATCCAAACACTCTTTGAATTATGCA
GCAGCCTTTATTTGACTCTTAACATTTTCTTCTGCACCTCTAAATAAGTA
GTTTACTCTTTAGAGTTCTCTACTAGAATTAATTAAAGGTTTAAGTGAAT
AGTATATCAGACCACACCCAAGAGTGTTTTTCATGAGACCCAGCATGTTA
ATGAAGAATAATGAGGATGGGATGGTCAACTGAAGTGTTTGAACATATGT
GTGATGATAGACTACAGAAATAAAGTTTGGAGTTATAATTTTAAGTAAAA
TACTAAAATCCCAAGTTAAGTAGAAGTCTAAAGAAGTAAAGTTGTCACAT
TACTTTCCATTCTAAAAATGTAACTATGTTTATACAAATATAAAAGTATA
TACTCCTGAAATACTATCATATATATATATTTATACATATATATATGTGT
GTTGTACATATATATGTATATATTTATATGATAGACAGATATAGGTCAAT
AGATTACACATTGATAGATAGATAGTTAATAGGTAGATAGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATAACGAATGGCAGAGAAGCACC
AGAAAAAATGTTCAACATCCTAATCATCAGGGAAATGCAAATCAAAACAA
CCTTTGATATTCCACCTCACGACAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTTAGAATTTTGTACATACTACTACTGGAGGATCCAGCAATACC
TCTTCTGGGCATATATCCATAAGATGTCCCAACCGGTATGAAGGACACAT
GCTCAACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATACACCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAATGAAGTACTACTCAGCTATTTAAAAGAATGAATTTATGAAGT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGCGAGGTAACC
CAATCACAAAGGAACTCACACAATATATACTCACTGATAAGTGGATATTA
GCCCAAAACTTAGGATACCCAAGATATAAGATACAATTTGCCAAATACAT
GAAACTCTAGAAGAATGAAGACCAAAGTGTGGACACCCTGCCCCTTCTT

Query= MSMg01no499_l14.b1 MSMg01no499_l14.b1 CHROMAT_FILE:
MSMg01no499_l14.b1 PHD_FILE: MSMg01no499_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:11 2005
         (662 letters)



>mm_chr3_111986117_111987178
          Length = 1062

 Score = 1241 bits (642), Expect = 0.0
 Identities = 657/662 (99%), Gaps = 2/662 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggagaaactgatttcaacaagtagagttgtttcaagggtcaggtttgcagacctgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tggagaaactgatttcaacaagtagagttgtttcaagggtcaggtttgcagacctgtttt 693

                                                                       
Query: 61  actttttactttttcattatgtgacaggcaagcagctcagaaagataagaaaggacaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 actttttactttttcattatgtgacaggcaagcagctcagaaagataagaaaggacaaga 633

                                                                       
Query: 121 gtatcacataatttttaagaagaaaagataggaaatgatatccaaacactctttgaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtatcacataatttttaagaagaaaagataggaaatgatatccaaacactctttgaatta 573

                                                                       
Query: 181 tgcagcagcctttatttgactcttaacattttcttctgcacctctaaataagtagtttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgcagcagcctttatttgactcttaacattttcttctgcacctctaaataagtagtttac 513

                                                                       
Query: 241 tctttagagttctctactagaattaattaaaggtttaagtgaatagtatatcagaccaca 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctttagagaactctactagaattaattaaaggtttaagtgaatagtatatcagaccaca 453

                                                                       
Query: 301 cccaagagtgtttttcatgagacccagcatgttaatgaagaataatgaggatgggatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cccaagagtgtttttcatgagacccagcatgttaatgaagaataatgaggatgggatggt 393

                                                                       
Query: 361 caactgaagtgtttgaacatatgtgtgatgatagactacagaaataaagtttggagttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caactgaagtgtttgaacatatgtgtgatgatagactacagaaataaagtttggagttat 333

                                                                       
Query: 421 aattttaagtaaaatactaaaatcccaagttaagtagaagtctaaagaagtaaagttgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aattttaagtaaaatactaaaatcccaagttaagtagaagtctaaagaagtaaagttgtc 273

                                                                       
Query: 481 acattactttccattctaaaaatgtaactatgtttatacaaatataaaagtatatactcc 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acattactttccattctaaacatgtaactatgtttatacaaatataaaagtatatactcc 213

                                                                       
Query: 541 tgaaatactatcatatatatatatttatacatatatatatgtgtgttgtacatatatatg 600
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 212 tgaaatactatcatatatata-a-ttatacatatatatatgtgtgttgtacatatatatg 155

                                                                       
Query: 601 tatatatttatatgatagacagatataggtcaatagattacacattgatagatagatagt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tatatatttatatgatagacagatataggtcaatagattacacattgatagatagatagt 95

             
Query: 661 ta 662
           ||
Sbjct: 94  ta 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)