BAC Information

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BAC

Clone NameMSMg01-499P05
Chromosome3 (Build37)
Map Location 82,168,847 - 82,168,990
singlet/doubletsinglet
Overlap geneMtap9
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499P05.T7 (MSMg01no499_p05.b1)MSMg01-499P05.TJ (MSMg01no499_p05.g1)
ACCAG575910AG575911
length724703
length of high quality
(start - end)
146 (424 - 569)84 (142 - 225)
definitionCHROMAT_FILE: MSMg01no499_p05.b1 PHD_FILE: MSMg01no499_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:29 2005CHROMAT_FILE: MSMg01no499_p05.g1 PHD_FILE: MSMg01no499_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAACGACNCACATAGTTCGTTACTGGCGGNANNCNCNGNGCTTTTCTG
CCATGGCGGNAGNANANNNNANGCCCCAANNCCNCNNCCAGAAAGGCNTT
CAAGCCCCCGGGGGGGGGGGGCGGCGGAAGNAAGNNCNNNNCANNNGAAA
NNNCGGGGCCCAACCCNACAGAGANNCCCNACGNAGGGANNNCCAGCNGG
GCAAAAAAGGAAGGCACCCACACCAAGGGGGGCACTTTTTTGCTGCTGCC
ACCTTGTGGCTAGAACGGAGTATTGCCTTACTCATTTTAATTCACTTTTA
CTGTTTTTTTTTCAACCCACNNNNCCCAGNAGNNAAGGCAAGGTCTTGCG
CCCCAGCCCGCANCCANGAAGGGCAGGCNAGCCNCAAACNCACAGCACCC
CCCCNGCCNCAAGATCAAGAGGGCTAGGACTTCAAGTCTGCACTAACACA
CCAGGCTCTAGCATAGCTTTAAAAATGTATTAACTAGGTGGAGTATTGTT
TAACACCTACAGTAAACTGATAATTATACACATCCAGACTAAAGTTTGTT
GCTATATTTACATTTCTTCTCTGGCTCCCTTTTTAACTTATCTCTCTGGT
CAGTTCTGGACAAGCACTTGGTCCCAGAACAATACTCCCGGTCTTTACTT
TTCTTAACATAAGTTGTTCAACTATGTTCCCTTCTGCCCGTGAATCCTCC
CCCCCACACACCACTTGGAAAGTT
GAAGGGACATCGTTACTGTGAGAACNANAGAAGGNACTGCATCTATCGGA
GCAAAGGNNCNCATTGNGTTGAANCTTCTCATGGTGTCCTATTATGACGG
AGGCCGTCCTACTGTGAAGAGCATGAGCATAGAATGATAAAGAATGATGA
TGTAACCATCATGTTCTGCTTTGGCCCACTACTTGGGCAGTTGCATGAAT
TCATTCATAGGGCAGAACTTTGGTCCTTTTTTTCTCTCAAAGGTCTCACT
TAATATTGTTAAATTGATAGGTGAACATTGCCTTGTGTTTTATATTCCTA
CTTTAGACNNAAATGAAGATTTGAAGCTCTCCGTTTTCTCTCGTAAGTTG
CCATTAGGTTCTACTTTTAGTTATCTTGCAAATTGTGGCCCCCCCTCAAA
CATTCACCATTAATATTTTTCATATTTTTGTAGAATTAACTTTTGGGGGG
GTGGGTTACTATGTAATCCTGGATGACCTGGAACACCATATATAAATCAG
GCTAGCTTGGAATTCACAGGGGTCTGTTAGCTTCTGCCTCGCCAGTGCCA
GTGGCCTGGAGCTATCATACTGAGTAATGAATCCTTTAACCCTAGATAAA
ACCACTCTATTGTCCTGGTCACGCTCTTAGTGATTTATTCTGCTTTTGAG
TAACTTCACTCTTACAGTTTTCTGATTGTTTATGTTTGGGGATACCTCTA
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_p05.b1 MSMg01no499_p05.b1 CHROMAT_FILE:
MSMg01no499_p05.b1 PHD_FILE: MSMg01no499_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:29 2005
         (146 letters)



>mm_chr3_82168647_82169192
          Length = 546

 Score =  279 bits (144), Expect = 7e-80
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggacttcaagtctgcactaacacaccaggctctagcatagctttaaaaatgtattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctaggacttcaagtctgcactaacacaccaggctctagcatagctttaaaaatgtattaa 285

                                                                       
Query: 61  ctaggtggagtattgtttaacacctacagtaaactgataattatacacatccagactaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctaggtggagtattgtttaacacctacagtaaactgataattatacacatccagactaaa 225

                                   
Query: 121 gtttgttgctatatttacatttct 144
           ||||||||||||||||||||||||
Sbjct: 224 gtttgttgctatatttacatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)