BAC Information

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BAC

Clone NameMSMg01-500B14
Chromosome3 (Build37)
Map Location 99,321,082 - 99,321,677
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
Downstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500B14.T7 (MSMg01no500_b14.b1)MSMg01-500B14.TJ (MSMg01no500_b14.g1)
ACCAG576021AG576022
length662690
length of high quality
(start - end)
596 (49 - 644)608 (57 - 664)
definitionCHROMAT_FILE: MSMg01no500_b14.b1 PHD_FILE: MSMg01no500_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:40 2005CHROMAT_FILE: MSMg01no500_b14.g1 PHD_FILE: MSMg01no500_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCACTATAGTGCGTAAACTCCGCGGAATCCATTATCTTCCCTTTATAAA
CGTTTTCTAATCTCTCTCATGACTTCTTTGATCTGCTGACTTTGGTATTT
TTAGATCTGTGCATTTATTTAACATTACTCATTGCACTCTTCAAACAGTC
TGTGTCCTTAATCAGGTTTCATACTTAACCTGTCATTTCTGATAGAGATG
TGCTTAAATTATTTATGGTGAATCTGGCCTCGTGGTTTCCTCCTTCTGGC
TTTCCATTCTAAAGATGTGATACGGGTTGTGCTATAATTTGTTTGTGTTC
AGGAAGCCGTCGGCTTTTCTTGGGGAGGTCTATTCCTGTCATCATGACTT
GCTTTACCTCTGAGACTATCCCATGACTAAAAGCACATTTTGTCTAACAC
TCGTCTGTTCACCTTTGCTTTATTTCACTCGGCACATGTTTATGTTCTTT
CGTTTTGATATTTCACACGCTCCTGTGCTTCAAGAGCTAGTCTTACTGCC
AGGTCTGACTGTTACGTTCCAGGTAACAGTTCTTTCAATTTAGTCGGCTC
ATTTGCAATTACTGGTATTGCTGTGCATCTGAATTTTCTCGCAGCATGTC
CTCTTCCCATTGTCCTTGGTTAGGATCTGAATGGGAATGGGAACAAACAG
CTCCCGTGAGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCACCATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCATACCTATTAAACATAG
TACTTGAAGTACTAGCCAGAGCAATTAGACAACAAAAGGAGATGAAGGGG
ATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATAT
TATAGTATATATAAGTGACCCTAAAATTCCACCAGAGAACTCCTAGGCCT
GATAAACAGCTTCAATGAAGTAGCTTGATATAAAATTAATTTAAACAAGT
CAATGGCCTTTCTCTACACAAAGGATAAACTGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGTGT
GACTGTAAATAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCCC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAAATGGAAAGATCTCCCATGC
TCATGGATTGGCATGATCAATATAGTAAAATTAGCTATCTTGCCAACAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_b14.b1 MSMg01no500_b14.b1 CHROMAT_FILE:
MSMg01no500_b14.b1 PHD_FILE: MSMg01no500_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:40 2005
         (596 letters)



>mm_chr3_99320882_99321877
          Length = 996

 Score = 1052 bits (544), Expect = 0.0
 Identities = 583/596 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacgttttctaatctctctcatgacttctttgatctgctgactttggtatttttagatct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aacgttttctaatctctctcatgacttctttgatctgccgactttggtatttttagatct 260

                                                                       
Query: 61  gtgcatttatttaacattactcattgcactcttcaaacagtctgtgtccttaatcaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcatttatttaacattactcattgcactcttcaaacagtctgtgtccttaatcaggtt 320

                                                                       
Query: 121 tcatacttaacctgtcatttctgatagagatgtgcttaaattatttatggtgaatctggc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 321 tcatacttaacctgtcatttctgatagagatgtgcttaaatcatttacggtgaatctggc 380

                                                                       
Query: 181 ctcgtggtttcctccttctggctttccattctaaagatgtgatacgggttgtgctataat 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcgtggtttcctccttctggctgtccattctaaagatgtgatacgggttgtgctataat 440

                                                                       
Query: 241 ttgtttgtgttcaggaagccgtcggcttttcttggggaggtctattcctgtcatcatgac 300
           | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgcatgtgttcaggaagccgtcggcttttcttggggaggtctattcctgtcatcatgac 500

                                                                       
Query: 301 ttgctttacctctgagactatcccatgactaaaagcacattttgtctaacactcgtctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctttacctctgagactatcccatgactaaaagcacattttgtctaacactcgtctgt 560

                                                                       
Query: 361 tcacctttgctttatttcactcggcacatgtttatgttctttcgttttgatatttcacac 420
           ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tcacctttgctttatttcacttggcatatgtttatgttctttcgttttgatatttcacac 620

                                                                       
Query: 421 gctcctgtgcttcaagagctagtcttactgccaggtctgactgttacgttccaggtaaca 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcctgtgcttcaagagctagtcttactgccaggtctgactgttacgttccaggtaaca 680

                                                                       
Query: 481 gttctttcaatttagtcggctcatttgcaattactggtattgctgtgcatctgaattttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttctttcaatttagtcggctcatttgcaattactggtattgctgtgcatctgaattttc 740

                                                                   
Query: 541 tcgcagcatgtcctcttcccattgtccttggttaggatctgaatgggaatgggaac 596
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcatcatgtcctcttcccattgtccttggttaggatctgaatgggaatgggaac 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)