Query= MSMg01no500_b17.b1 MSMg01no500_b17.b1 CHROMAT_FILE:
MSMg01no500_b17.b1 PHD_FILE: MSMg01no500_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:41 2005
(587 letters)
>mm_chr3_63142747_63143733
Length = 987
Score = 1073 bits (555), Expect = 0.0
Identities = 579/591 (97%), Gaps = 8/591 (1%)
Strand = Plus / Plus
Query: 1 ttaacttaaggcatttgtataatcaaaaaagggttggtaatgcaaatagtgtgtataaat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ttaacttaaggcatttgtataatcaaaaacgggttggtaatgcaaatagtgtgtataaat 260
Query: 61 taagttgtatctgaagataagatgtaaacatattgagattatggaagaaagatggtgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagttgtatctgaagataagatgtaaacatattgagattatggaagaaagatggtgcct 320
Query: 121 agctctatggtatcttatagtaaaatgtcacagtagtggaggtataatgggaaaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctctatggtatcttatagtaaaatgtcacagtagtggaggtataatgggaaaaattta 380
Query: 181 caatcttttatttgctgggttaactcccctgaacagtctcaaaaaagtgtaacttgacct 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatcttttgtttgctgggttaactcccctgaacagtctcaaaaaagtgtaacttgacc- 439
Query: 241 ttt----atgaatctgtcaagatgttgtgatcatattctatgaatatgtcactgtctctg 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ---caagatgaatctgtcaagatgttgtgatcatattctatgaatatgtcactgtctctg 496
Query: 297 tggagagccatgagcagttgccatcatgagcctccactgtgcctaactggtaacaagtaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggagagccatgagcagttgccatcatgagcctccactgtgcctaactggtaacaagtaa 556
Query: 357 tgtgcgcaggtgcaagagtaaatttgtgccaagtcactgcccatcccggggcgtggtgat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtgcgcaggtgcaagagtaaatttgtgccaagtcactgcccatcccggggcgtggtgat 616
Query: 417 gaggctctgggagagcagccaatcaggtgtggacacgccacactcaggtgtatataagca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaggctctgggagagcagccaatcaggtgtggacacgccacactcaggtgtatataagca 676
Query: 477 gcacctttttggtgcttggggtcttcctcttcatgttgaaactggtgtaataaagttgct 536
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcgcccttttggtgcttggggtcttcctcttcatgttgaaactggtgtaataaagttgct 736
Query: 537 gcagaaggatccggtttctcacacgtgtgttcttgctggcgagacaatagc 587
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcagaaggatccggtttctcacacgtgtgttcttgctggcgagacaatagc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_b17.g1 MSMg01no500_b17.g1 CHROMAT_FILE:
MSMg01no500_b17.g1 PHD_FILE: MSMg01no500_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:41 2005
(590 letters)
>mm_chr3_63326381_63327370
Length = 990
Score = 1141 bits (590), Expect = 0.0
Identities = 590/590 (100%)
Strand = Plus / Minus
Query: 1 tccttcccatcacagttgattataaaatcttggaaagttctttatttgtgaactaaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tccttcccatcacagttgattataaaatcttggaaagttctttatttgtgaactaaatat 731
Query: 61 aaagctataccctccaacaactttgcaggttgctacactttggaaacaattggcagccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aaagctataccctccaacaactttgcaggttgctacactttggaaacaattggcagccct 671
Query: 121 ttaaattctgtcgtaagaaaacaaagcaaggaggcttcccagtgtttaaggatccatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttaaattctgtcgtaagaaaacaaagcaaggaggcttcccagtgtttaaggatccatgac 611
Query: 181 aattacatttccagccacaagcccttcttaagcaaaataaattcttttcactcttgactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aattacatttccagccacaagcccttcttaagcaaaataaattcttttcactcttgactt 551
Query: 241 cctaatgaggcaacaggtactttggaacaagtgttcatgggtttataaccacatggggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cctaatgaggcaacaggtactttggaacaagtgttcatgggtttataaccacatggggtt 491
Query: 301 tttggatcccaggatggaaagaggggctataaagttattttctgcatactgcccttgttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttggatcccaggatggaaagaggggctataaagttattttctgcatactgcccttgttc 431
Query: 361 ttcacagggacttgctctcatttggtggggagagctgtgctttggttgtagaagctgccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttcacagggacttgctctcatttggtggggagagctgtgctttggttgtagaagctgccc 371
Query: 421 ccacctgacccctgggcagagtgtactgtgaactatttcattctgggctgggtaatgagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccacctgacccctgggcagagtgtactgtgaactatttcattctgggctgggtaatgagg 311
Query: 481 gtgattcctgttttggaaactgcttaagtccaatatatatccaacataactcaacaccga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtgattcctgttttggaaactgcttaagtccaatatatatccaacataactcaacaccga 251
Query: 541 gtcaatgcagatgacatatattcattgtaattaagccagtactgatccat 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtcaatgcagatgacatatattcattgtaattaagccagtactgatccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
