BAC Information

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BAC

Clone NameMSMg01-500C11
Chromosome3 (Build37)
Map Location 72,481,176 - 72,481,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500C11.T7 (MSMg01no500_c11.b1)MSMg01-500C11.TJ (MSMg01no500_c11.g1)
ACCAG576063AG576064
length710720
length of high quality
(start - end)
226 (57 - 282)508 (94 - 601)
definitionCHROMAT_FILE: MSMg01no500_c11.b1 PHD_FILE: MSMg01no500_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:44 2005CHROMAT_FILE: MSMg01no500_c11.g1 PHD_FILE: MSMg01no500_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGAGATACAAAGATCCGCNGGAATCNNNGNTTACCCAAAAAACGGAGC
CAGGGNTTCTATTCCTGCACAAACATCATGACCAAGATTCAAGTTTGGGG
AGGAAAGGATTTATTCGGCTTACCCTTCCATACTGCTGTTCATCACCAAG
GAAGTCAGGACTGGAACTCAAGCAGGACATGAATCTGGAGCTGATGCATA
AGCCATGGAGGGGTGTTCTTTATTGGCTGGCTTCCTCTGCCTTGCTCAGC
CTGCTCCCTTATAGAACCAAGACTACCAGTCTATAGATGGCTCCCACCCA
CAAGGGGCACCTCCCCCCTTGATCACTAATTGAGTAAATGCCTTACTGCT
GATCTCATGAAAATTCCTTCACTGAGCTCCCTTCTTTGAAAACTCAGCCT
GGGCAAGTGACCACAAAATAACCAGAAAGGTCGTACCAAAATTAAATGGG
GTACCCTTCCTGACCCTTTAATTTTGTTTTTTTTTTGAAAGGTTTCCTGG
ACCCCGGTGCCGAAATTCCTTAAAAAACGGCCCAATCAAATTTTGGCCTC
TCCCCGTGTAAAAAAGGAAACCCCTGCGCGGCACCGTGGTTTTTTTATAT
TTTAAAACCCCCTCTGTCTTTTGTTTTCCCAACGCCTCTCGGGGTGTGAG
ATCTTTAAAGAAAACTTTTTGCACAAACTTTTCGAACTCTTTACGTTATA
GTCTGTCACA
CTGTCCTATACAGCGCGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGTAAGGTGATATCCTTTT
TTTTGCTATAGTTCAACAGAGCATACTCTCTCATGATATTATCAGAAGAG
AAGCTGGGATAGTTGTGGAGGTATAATGGGGAATGCATTTGTTTCATTGA
GTAGCTATTTGCCTTAACTTTAGGTAAAAAGCTCCATTATGTTATTCTCA
ATATTTCATATGACAAAGACTGAGTTTCATAGCAAGGACTCATCAATTAA
CTTTTGTTCTTAACTATTTCTAACTTCAAATTTCTATGCTAATGAGTGAG
GAGATTTTCCTAATCTTCATATATAACTACCCAAATAATTTCCACTAATA
GCACTTACATAAATAAAGCAGAAGTTTGTTAATTAGAATCAGGTAAAGCA
ATTGCTTATATAAACTATTATGGAAAATTAGAATGCATATTTAAACCACA
CAACAAGCTTACTTAAATGGGACATTTGTTCTCCATAATTCAATTCTCTT
CACTTAGCTTGCTCTACTGGTATATGTTGCCTGGTAGGCATATGAGTGTC
CCTGCATCCAATGACTGTTATGTCTCTTTATATATGACCGTGGAAAAAAT
ATTTGGATAATTCTGACATAGTCTGACTCTTGCACTATTGAAAATGCCTT
CCTAAAACTGAGATCTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_c11.g1 MSMg01no500_c11.g1 CHROMAT_FILE:
MSMg01no500_c11.g1 PHD_FILE: MSMg01no500_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:45 2005
         (508 letters)



>mm_chr3_72480970_72481877
          Length = 908

 Score =  891 bits (461), Expect = 0.0
 Identities = 491/501 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   tttttgctatagttcaacagagcatactctctcatgatattatcagaagagaagctggga 66
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 207 tttttgctatagttcaacagagcatactctctcaagatattatcagaagagaagctggga 266

                                                                       
Query: 67  tagttgtggaggtataatggggaatgcatttgtttcattgagtagctatttgccttaact 126
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tagctgtggaggtataatggggaatgcatttgtttcattgagtagctatttgccttaact 326

                                                                       
Query: 127 ttaggtaaaaagctccattatgttattctcaatatttcatatgacaaagactgagtttca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttaggtaaaaagctccattatgttattctcaatatttcatatgacaaagactgagtttca 386

                                                                       
Query: 187 tagcaaggactcatcaattaacttttgttcttaactatttctaacttcaaatttctatgc 246
           |||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||
Sbjct: 387 tagcaaggactcatcaattaacttttgttcttaactagccctaatttcaaatttctatgc 446

                                                                       
Query: 247 taatgagtgaggagattttcctaatcttcatatataactacccaaataatttccactaat 306
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 447 taatgagtgaggagattttcctaatcttcatacataactacccaaataatttccactaat 506

                                                                       
Query: 307 agcacttacataaataaagcagaagtttgttaattagaatcaggtaaagcaattgcttat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agcacttacataaataaagcagaagtttgttaattagaatcaggtaaagcaattgcttat 566

                                                                       
Query: 367 ataaactattatggaaaattagaatgcatatttaaaccacacaacaagcttacttaaatg 426
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 567 ataaactattatggaaaattagaatgcatatttaaaccacacaacaagctgacttaaatg 626

                                                                       
Query: 427 ggacatttgttctccataattcaattctcttcacttagcttgctctactggtatatgttg 486
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 627 ggacatttgttctccataattcaattctcttcacttagcttgttttactggtatatgttg 686

                                
Query: 487 cctggtaggcatatgagtgtc 507
           |||||||||||||||||||||
Sbjct: 687 cctggtaggcatatgagtgtc 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)