BAC Information

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BAC

Clone NameMSMg01-500H10
Chromosome3 (Build37)
Map Location 19,057,709 - 19,058,230
singlet/doubletsinglet
Overlap geneArmc1
Upstream geneCyp7b1, LOC622921, LOC100040153
Downstream geneMtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500H10.T7 (MSMg01no500_h10.b1)MSMg01-500H10.TJ (MSMg01no500_h10.g1)
ACCAG576297AG576298
length689797
length of high quality
(start - end)
523 (114 - 636)59 (55 - 113)
definitionCHROMAT_FILE: MSMg01no500_h10.b1 PHD_FILE: MSMg01no500_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:06 2005CHROMAT_FILE: MSMg01no500_h10.g1 PHD_FILE: MSMg01no500_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGGAATTCATCTT
TTTCCAATGCACATGAATAAAAGCTTCTTAAATTCTGAAAAAAAAAAAAA
AATTATAAAACAAGAGTAGAAGTCAGGTTGACAAAATCAGTCCTCGTCTG
CCAAGGTAGAGGAGGATTCCATTTGTCTGTTTACTTACACAGTGCAGACT
GGCCTCAGACTCACTGCGCTGCTGATGCTGTCCATGTATTATCCCCCTGC
CTCTGATTCTCAAAAGCTTGGATGACAAGCAAGCACCCTCTGTGCCTAGC
TTTGTTTTCTTTAAGTAACTACATTATAATATCTTTAGAAAGAAGCAGAT
GAATCTAAATCACACACACAAAAATAAGGACTGGCAATTCTAAAGCTTGT
GAAAAATAAAATGAACATAAGCTGAAGGAAGCAATCAAGTTATTTATATA
TGCAAAAGCACATATGCCATCCTCAATACTCCAATAAATCCCATTTTAGC
AATACATATTTTAACACTAAGGTTCCAATAAGCACGGTCTTTACGTACAA
GCTTGTAACCTTTGCTCCCCTTTTCAAACTGTAACACTGCCAGGACTTTT
CCCTCCTAGGACCTTTCTAGGCCTAAAAAAAAAAATGCCTCAAGGCAAAG
TGGCGAGCTGACAGCCTGGGTTTTTCTTACTCCTCTGTG
TGCGGCCGCCTGGTTCATTACTCAGGTGAACTATAGATTTTCCAAACCAC
TTCCATGCAGTGTATCTTAATCATACATATTCACCTTCACCCCCTGCCGT
GTTCTTTGTATGTTTGGGTGGTGGTGGTGGTGATGGTGCTGGCGCCTATA
CTCTCCCTCCCCCTTACTCCTCCCCCCCCCTCATTTCCTCTCCACAACCA
TATTCTCCCCCTTCCCTTTTTTTTTTTCCTCCTCCATTCTTTTCTTTTTC
CCTCCCATCCCATTTTTCATTCACCATCTCTACACTCTCATTTTCATCAC
ATTACCCCAACCCCCTATTCCCACTATTCCTTCTTCTTTCTTCTCTTTCC
CCCTCCCTTTTACTCTTCCCCTATCCTCCTTTCCCTTCCATCCTTACCCC
TTCTTTTTCTCCCCCCCCCCCCCACTCATTCTCTTTCTTCCTTTCCTTCT
CCACTTCCCATATATCCCACCTATTTTCCCCCCCTCCCCTCCTTCTTCCT
TCCCTTTACTTAATCTCACCTTTTTCCACTCTTCTTTTTCCCTCCTTTTT
TCCTTCCTCCTCCCACTTCTCTCCCTTCTCTTTTTTCTTCTTTTTATTCC
CCTTTTTTTTCCACTCTTTATTACTTCCCTTCCTCTTCCTTTTCTCCCAC
CTTATCTTTTCTTTTTTTTCTCTCCCTCTCTACATATATTCCCACCCTTA
TCTTCCTCTCTCTTTTCCCACATTTATTTATCCTCCTTTACCTATTCCCT
TTTTCACTTTCCTTATCTCTCCCTCTTCTTTTCCTCCTTTTTTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_h10.b1 MSMg01no500_h10.b1 CHROMAT_FILE:
MSMg01no500_h10.b1 PHD_FILE: MSMg01no500_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:06 2005
         (523 letters)



>mm_chr3_19057509_19058431
          Length = 923

 Score =  948 bits (490), Expect = 0.0
 Identities = 514/522 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtagaagtcaggttgacaaaatcagtcctcgtctgccaaggtagaggaggattccatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 gagtagaagtcaggttgacaaaatcagtcctcgtctgccaaggtagacaaggattccatt 260

                                                                       
Query: 61  tgtctgtttacttacacagtgcagactggcctcagactcactgcgctgctgatgctgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctgtttacttacacagtgcagactggcctcagactcactgcgctgctgatgctgtcc 320

                                                                       
Query: 121 atgtattatccccctgcctctgattctcaaaagcttggatgacaagcaagcaccctctgt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtattatccccctgcctctgattctcaaaagcttggatgacaagcaagcaccctctgt 380

                                                                       
Query: 181 gcctagctttgttttctttaagtaactacattataatatctttagaaagaagcagatgaa 240
           |||||||| || |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagctctggtacctttaagtaactacattataatatctttagaaagaagcagatgaa 440

                                                                       
Query: 241 tctaaatcacacacacaaaaataaggactggcaattctaaagcttgtgaaaaataaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaatcacacacacaaaaataaggactggcaattctaaagcttgtgaaaaataaaatg 500

                                                                       
Query: 301 aacataagctgaaggaagcaatcaagttatttatatatgcaaaagcacatatgccatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacataagctgaaggaagcaatcaagttatttatatatgcaaaagcacatatgccatcct 560

                                                                       
Query: 361 caatactccaataaatcccattttagcaatacatattttaacactaaggttccaataagc 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatactccagtaaatcccattttagcaatacatattttaacactaaggttccaataagc 620

                                                                       
Query: 421 acggtctttacgtacaagcttgtaacctttgctccccttttcaaactgtaacactgccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acggtctttacgtacaagcttgtaacctttgctccccttttcaaactgtaacactgccag 680

                                                     
Query: 481 gacttttccctcctaggacctttctaggcctaaaaaaaaaaa 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacttttccctcctaggacctttctaggcctaaaaaaaaaaa 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)