BAC Information

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BAC

Clone NameMSMg01-500K18
Chromosome3 (Build37)
Map Location 120,896,227 - 121,050,985
singlet/doubletdoublet
Overlap geneTmem56, LOC668778, LOC668780, Alg14
Upstream gene2510027J23Rik, LOC435752
Downstream genePpia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500K18.T7 (MSMg01no500_k18.b1)MSMg01-500K18.TJ (MSMg01no500_k18.g1)
ACCAG576457AG576458
length699698
length of high quality
(start - end)
113 (198 - 310)122 (265 - 386)
definitionCHROMAT_FILE: MSMg01no500_k18.b1 PHD_FILE: MSMg01no500_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:20 2005CHROMAT_FILE: MSMg01no500_k18.g1 PHD_FILE: MSMg01no500_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,896,227 - 120,896,339)(121,050,865 - 121,050,985)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTT
TCTATGCATGTAATTATGGATTGAGTCACTCATGAGATATATCACTTGCA
GCAAATAATATTAATAATAATAATTTAAAGAGCCTAGATTTGAGGTCAAA
TAGTTCTCACTTGAACTGCCTTATCCTAAGCATGTTGTTAAGCTAAACAT
CATTCAATGGCATTACAGCCAGGGCATAAACCGGTAGATGTCCTATCACA
TCTGTATCCCTCATGCTTCGCACAGACCATGCTCCAGCCTCCCTTCCACT
GAACAGTCACCAAGAGACCCCACCTCAGGGACTCTGTACTTGCCTCCTCT
TCTATCAGCTTCCTTCTGATCTTAAGGCAAATGGTGCCTCTACAAACCCT
TTCTAATGCCCCCCCCATCTCTACCTTCTTCTTTTTCTCCCACAGCAGAT
ACACCTCTCTGAAACTACCTGATTTATTTCTGGTTTTCAGACTTGGTTAC
CATCCCTGTGTTTGCTAGAATGGAGTAATCCCGAGAGAACAGAACCTTGT
CTGTCTCCTTTGCTGATGTGTTGCCAGAACCTAAAATACATACATACACT
ATATAACATGTATAGGGGATAAATATTTTTGATTTACTGGGTTATTCAGT
GCATATCTTATGCTACGACTGCAGAGATATCTCAGTGGCTGAAGTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTCCATCCCAGGCAACTTTTAAAGCAGAAGACGGCAGTTAA
AACAAAACAAACTAAACGGACATCAGTTCACAAAATAAATGGCTGGCTCA
GCACCCCATGAGGTATGTGGTTTTATTAGGGTTTTCTTTTCTTTTTAAGT
AAAATGAGACCTCACGGACTTTATTTGAATATTTATATATAATTATGCAG
GGGACAGGAGAATGAGTTATATTCTGGAATTCTTGAAAGCATGTGTTCCC
CCATCACCCCCCATTGTCCCCACACTGGCTTGTTTTTATTATGTTCCCTT
CTCTTGCCTCTCAACTGGCAAATGTGTACAGAGCAAGGGCAGCTTGTCCC
TGCAGGGGAGTCTCTGCAGAATGTCTGCCAGGCCCCTCTCTGTCAGCTGC
AATGGTCCCTCCTGGGTTCCATTCTCTACGGAGACTCTGAGCCTGCATGA
ACAGGGCCCTGGCAGCCAAGACATATGGAATCACACCTTAATAGGTGTCC
TACCAGGCTGGAGAGATGGCTTAGTGGTTATTCTATAGGATCAGGGTTCA
ATTCCCAACAGCCACAAGGCATGTCACAACTGTCTATACTCCAGTTTCAG
AGGGCCTGACACGCTCACACACACATGTGTACAGGCAATATACCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_k18.b1 MSMg01no500_k18.b1 CHROMAT_FILE:
MSMg01no500_k18.b1 PHD_FILE: MSMg01no500_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:20 2005
         (113 letters)



>mm_chr3_120896027_120896539
          Length = 513

 Score =  180 bits (93), Expect = 2e-50
 Identities = 108/113 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcattcaatggcattacagccagggcataaaccggtagatgtcctatcacatctgtat 60
           |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 201 catcgttcaatggcattacagccacggcataagccggtagatgtcctatcacatctgtat 260

                                                                
Query: 61  ccctcatgcttcgcacagaccatgctccagcctcccttccactgaacagtcac 113
           |||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ccctcatgcttcacacagaccatgctccagcctcccttccactgaacattcac 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no500_k18.g1 MSMg01no500_k18.g1 CHROMAT_FILE:
MSMg01no500_k18.g1 PHD_FILE: MSMg01no500_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:20 2005
         (122 letters)



>mm_chr3_121050664_121051185
          Length = 522

 Score =  219 bits (113), Expect = 6e-62
 Identities = 119/121 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   gttatattctggaattcttgaaagcatgtgttcccccatcaccccccattgtccccacac 61
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 gttatattctggcattcttgaaagcatgtgttcccccaccaccccccattgtccccacac 263

                                                                       
Query: 62  tggcttgtttttattatgttcccttctcttgcctctcaactggcaaatgtgtacagagca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggcttgtttttattatgttcccttctcttgcctctcaactggcaaatgtgtacagagca 203

            
Query: 122 a 122
           |
Sbjct: 202 a 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)