BAC Information

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BAC

Clone NameMSMg01-500N24
Chromosome3 (Build37)
Map Location 106,894,446 - 106,894,979
singlet/doubletsinglet
Overlap genenone
Upstream geneChia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432
Downstream geneKcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500N24.T7 (MSMg01no500_n24.b1)MSMg01-500N24.TJ (MSMg01no500_n24.g1)
ACCAG576608AG576609
length729670
length of high quality
(start - end)
---534 (59 - 592)
definitionCHROMAT_FILE: MSMg01no500_n24.b1 PHD_FILE: MSMg01no500_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:36 2005CHROMAT_FILE: MSMg01no500_n24.g1 PHD_FILE: MSMg01no500_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGATCCGCGGAAT
TCATCGNTTTCATAGCTGAGTANTTCTCCGTTGTGTAAATGACCACAATT
TCTGAATTCTTCCTCTGTTGAGGAACTTCGGTTTCTTTCAATCNTTGGAA
ACTAAACTGCGGGGGATCCTAGAAGCGGCGAGGCCCCTTTAAACCTTTAA
AAACTCNTTTATACCCCAAAAAAAAAATNNNTTTTNTTTTAATTTTAACC
TCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAAAATCTATACTACAGACTATACTAGTTCGACTACTA
TAACAAACNNNNNNTNNNTNNNNNNNTCATTNCTTTTNNTNTTNNTTNNT
CNNNNNTTNNNNNTNNNNNNNTNNNNNNNNTNNNNNNNNNNNNNNNNNNN
NNNNTNNNNCCCCCCCCCCCCCNCNTTNNNCNCNCCCTCTCTTTCCCTTT
TTTTTTCNTTTTCTCCCCCCCCCCCCCCCCCCCCTCTCCCCCCCCCCCTC
CTTTTTTCTTTTTTNNTTCCCCTTTTTTCCCCTCNCTCTTTCCTCCTCTC
TCCTCTCTTTTTAAAAAAAAAAAATTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCAGAATGCTCACATCATGGGGGGAGGGAAGGGAGAAAAGG
GCTGTCCTTCTTGCCATCCCAGTAAAGAATATGGAAGGTTGGACCACCAC
TGTGTCCCTGCTCGGGGTCAGTGCTTGTCCTGCACTGGGGTCAGGGCTTT
TACCTCAGAAAGAATAAATAATTTATCAGCAGCATCTGCAGAGTTAAAAC
CAGTACTTTAAATAAATCTGACAAAGGTTTTGTACGATTTTCATTCAAAG
CACCCGCCTTCCTGTCCTTTCTGTGTGGCAGAGGTGACTGCGCTCTGAAG
ATGAGAGCCGCTATCCAGAAGTGAGTTCCAGGTGCGTGCTTGTGGATAGG
TCTGGGATATGGAAAGACACTGGAGCTGGAAGATGCGGATGGGAAGAAAA
GATAGGATGCTGACCCTCCTAAAGGGGCTTGCTCACCTGTGAGGATACCT
GCACTGCAAGGTAGGGTCTTGACTGCTTACAGGCAGGGCTCACTGGACCA
CATACTGTTGTTGCTGGATCCTTCCCGTGCTACATGGAGGCTGGCCATTA
TAGTGTGGAAAAAGACTTTCTTCNTATTTGAGGAGTCTAGAAGCCCAACT
TTCTTCGGCTTTTGCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_n24.g1 MSMg01no500_n24.g1 CHROMAT_FILE:
MSMg01no500_n24.g1 PHD_FILE: MSMg01no500_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:36 2005
         (534 letters)



>mm_chr3_106894246_106895179
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagaatgctcacatcatggggggagggaagggagaaaagggctgtccttcttgccatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 734 ttcagaatgctcacatcatggggggagggaagggagaaaagggctgtccttcctgccatc 675

                                                                       
Query: 61  ccagtaaagaatatggaaggttggaccaccactgtgtccctgctcggggtcagtgcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccagtaaagaatatggaaggttggaccaccactgtgtccctgctcggggtcagtgcttgt 615

                                                                       
Query: 121 cctgcactggggtcagggcttttacctcagaaagaataaataatttatcagcagcatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cctgcactggggtcagggcttttacctcagaaagaataaataatttatcagcagcatctg 555

                                                                       
Query: 181 cagagttaaaaccagtactttaaataaatctgacaaaggttttgtacgattttcattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagagttaaaaccagtactttaaataaatctgacaaaggttttgtacgattttcattcaa 495

                                                                       
Query: 241 agcacccgccttcctgtcctttctgtgtggcagaggtgactgcgctctgaagatgagagc 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 494 agcacccgccttcctgtcctttctgtgtggcagaggtgactgtgctctgaagatgagagc 435

                                                                       
Query: 301 cgctatccagaagtgagttccaggtgcgtgcttgtggataggtctgggatatggaaagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cgctatccagaagtgagttccaggtgcgtgcttgtggataggtctgggatatggaaagac 375

                                                                       
Query: 361 actggagctggaagatgcggatgggaagaaaagataggatgctgaccctcctaaaggggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actggagctggaagatgcggatgggaagaaaagataggatgctgaccctcctaaaggggc 315

                                                                       
Query: 421 ttgctcacctgtgaggatacctgcactgcaaggtagggtcttgactgcttacaggcaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgctcacctgtgaggatacctgcactgcaaggtagggtcttgactgcttacaggcaggg 255

                                                                 
Query: 481 ctcactggaccacatactgttgttgctggatccttcccgtgctacatggaggct 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctcactggaccacatactgttgttgctggatccttcccgtgctacatggaggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)