CGACTCACTATATCGAGAGGATCCGCGGAATTCCAAGGTATTTCCGGCTG
TTACACAGAGAAATGCTGTCTGGACAAACAAAACAAACAAAACAAAACAG
CAGCAGCAACAACAACAGCAACAGAACAACAATAAAACCCCAGTGCTTTA
AAATTATAATCTTATATTTATTTTGTGTGTACATGCTCATGTGGAGATAA
CAACTTCCAATAACAAGAGGAGGTGTTTATAAAAAGCAAAACATACCAAC
AACCAGATAGCATCTGTCTTCTTATCCAAGTATCCAAATGCTAACCTATC
CTACCCATCAAAATCATTGTCCCATAATAAATAGATCATAAATTATGGTC
CATGTCTACCAGGTACCTCTTTTTGTCAACAAGGATTTATTGAAACACAG
ATGAGCCCTGTTGTTTATTATAAATGTTGTCTATTACTGTCAGAGCAGTA
TAGTTACAGCGCAGAATAAACAATGTTTAATGACCCATGTATTTCCTATA
TCTGTGGCCCCTGATCATAAAAGTCACTCACTTTTACTCAGACCTTGACT
TTCCACAACAGATATCAGCATTTCTTCTGTGCTAGTCCTGGGCTTAGGTC
TCCTGCCCTGCTTTTTTACTACTGCTCCTTTAAGGTGAAACTTGAAGTCA
ATATTTTCTTATGTCTCTTGCCAGTATCCATCCTTCCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCCTGAGTAGGAATTACTTGCCAATTTCTAACAAATAAACAA
ACATGGGTAAGCTTTGAGGTTGATTGCTTTGAGTCTTTTGAACTCTGAGG
GGAAAAGCCATCTTAATATTGTTTTCCTTCCTCAAACAGTGAATATGTTC
CATTAATTTAGTTACTTAATTTCTTTTGAAAACCTTTGATGTCTTGCACC
ATATATATTCAGTCTTTGTACTGAGCTTATTCCTAGCTATTTTATTCATG
TGACATTAATGAAATTGGAATTGCATTCATACTTTTATTTTTCATTCACT
GTTATTATTTATTTATAAGTAAGACGTTTAAAATGTTGATTTTTCTTTTC
TCTAATCTTTAGTACCTCAGTTATTAGGTTATTAGATCTAATAGCTAAAT
GAATCTAGGACTTTCAATTACAAAGTCAGGTAACCTGTAAACATGGTTTC
ACTTGTTATCTTCCAGTGAAGAAGGCCTTAATTTAATTTTCTTAATAAGG
TTAAAAATAGAATTGGTGTGTAATCTATATATCTATGTATGTATCTTTCT
AGCTCTCATCTATCTTCCATCTAGCCATCTATGTATATAAAGAGATTTCT
TTTAAAAAGATATTGGCTCCTAANGCTGTATAAGCTCATATATCCCAATA
TCTTCAGN

Query= MSMg01no501_c12.b1 MSMg01no501_c12.b1 CHROMAT_FILE:
MSMg01no501_c12.b1 PHD_FILE: MSMg01no501_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:57 2005
         (629 letters)



>mm_chr3_117750890_117751917
          Length = 1028

 Score = 1110 bits (574), Expect = 0.0
 Identities = 611/626 (97%), Gaps = 7/626 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccaaggtatttcc---ggctgttacacagagaaatgctgtctggacaaacaaaac 63
           |||||||||||||    |   |||||||||||||||||||||||||||||||||||||| 
Sbjct: 975 gaattccaaggta---gcaagggctgttacacagagaaatgctgtctggacaaacaaaat 919

                                                                       
Query: 64  aaacaaaacaaaacagcagcagcaacaacaacagcaacagaacaacaataaaaccccagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 aaacaaaacaaaacagcagcagcaacaacaacagcaacagaacaacaataaaaccccagt 859

                                                                       
Query: 124 gctttaaaattataatcttatatttattttgtgtgtacatgctcatgtggagataacaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gctttaaaattataatcttatatttattttgtgtgtacatgctcatgtggagataacaac 799

                                                                       
Query: 184 ttccaataacaagaggaggtgtttataaaaagcaaaacataccaacaaccagatagcatc 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttcaataacaagaggaggtgtttataaaaagcaaaacataccaacaaccagatagcatc 739

                                                                       
Query: 244 tgtcttcttatccaagtatccaaatgctaacctatcctacccatcaaaatcattgtccca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgtcttcttatccaagtatccaaatgctaacctatcctacccatcaaaatcattgtccca 679

                                                                       
Query: 304 taataaatagatcataaattatggtccatgtctaccaggtacctctttttgtcaacaagg 363
           ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taa-aaatagatcatagattatggtccatgtctaccaggtacctctttttgtcaacaagg 620

                                                                       
Query: 364 atttattgaaacacagatgagccctgttgtttattataaatgttgtctattactgtcaga 423
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atttattgaaacacagatgtgccctgttgtttattataaatgttgtctattactgtcaga 560

                                                                       
Query: 424 gcagtatagttacagcgcagaataaacaatgtttaatgacccatgtatttcctatatctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcagtatagttacagcgcagaataaacaatgtttaatgacccatgtatttcctatatctg 500

                                                                       
Query: 484 tggcccctgatcataaaagtcactcacttttactcagaccttgactttccacaacagata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggcccctgatcataaaagtcactcacttttactcagaccttgactttccacaacagata 440

                                                                       
Query: 544 tcagcatttcttctgtgctagtcctgggcttaggtctcctgccctgcttttttactactg 603
           ||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 439 tcaacatttcttctgtgctcgtcctgggcttaggtctcctgccctgctttcttactactg 380

                                     
Query: 604 ctcctttaaggtgaaacttgaagtca 629
           ||||||||||||||||||||||||||
Sbjct: 379 ctcctttaaggtgaaacttgaagtca 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space:   630142
Effective search space used:   630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)