GGCGCCGCTAAACGACCACAAATCCCGACCCGCCNNCGGATTCTCCCTCG
TGCGTCCATCGCCCTCTCCCTCTCCCTCTCCATCTCCCTCTCCCTCTCCC
TCTCCCTCTCCCTCTCACTCTCACTCTCACTCTCACGCACAGGCACAGTT
TCAGGAGGGGAGGGGGTAACGAACCGGGGACGGGAACCGAAACCGAAACC
GGAACAGAAACGGAAACGAGAAACGGACAGCGAGAACGAATTTTTATAGG
CAGGCGGAAGAGCAAGATGAGGCAGAAGAGGAAGCGCAAGAGCAACAGAA
AGAGCGATTTAGTGTTTAACACAGACGCAGGCAGAAGAAAGAAGAAGTTT
TATTCCCCCCCCAAAGCGGGGAAGGAAAAGAGAGACAGAGGGGAAAGGGA
GGATCGCCCCCGGGAGAGAGTATGGGAAAGACACAAATGAGGGAGAAAGA
AAGGGAGAAGACGGGACCCACCGCCGCAGTGAAAAACGCCGGGGGAGAGA
GACGCGCGGAGAGAACCGAGAAGTAACAGGCGAAGAACCGCGCGGGGGAG
AGACCAATAACAGAGGGAGACGAGCACGAGGAGCGAAAAAAGAAACCCGA
AACAGAAGGATAACGAGGGAAAGAAAGGGAGAAGAAGCCAAACAGACGAT
CAAGAAGGCCAGGAGGAAGAAAGAAAGAGAAAAGAAAGAAGAAGAAAAGA
AAGAAAGTTGCGTCACACGCAACGCAAGCGGAATAAAGGAAGACGCACAT
CGACACCAGACTCAGACACACCACTTATGGCAAGAAGGAAAGAAGAGAGA
N

CCTGGCGGCCGCCTGGTTCACAACATGGGGTGAACTATAGAAGTTTCGCA
GAAATCTAATTCGCTCATTTCATACTCGGCCCCATAGTTAAGTCTATATG
GCAATCGAAATGAACTAGCTATCTCCTTAAGGACACTTTTCGTGTCTTCT
TCCCAGAGACTATATTCTACTTTGTGCCTTGTGGTAGCCACAGTCCTAAG
ATCTTGGTTTCAATATTGCTAAGCTTTATATCTCACATTCAACAATATAG
TAATTTGCATGGTAAATTCTATTTCCACCCCACCTACTAGGCTGCTCCTT
CTTTATTCTTGCTCCTCCTCTTAATCATTTTCCTGATGTTATGAGAATTC
TTTCCCATGTGGATATAAACAATGTTTATTCCATTCTTACAGAGTCCAAG
CAACATAGCGACATTTGTTCCACTCCAGTTCACCACAATAACCAATATGT
TTCTTGGACTTCCAGAGCATGCATGATGCTAAGAAAGTTTGCATGATTCA
TAGCCAACACGAATGATGGACTATATAAATAATATTTCTAATTCTGTGCT
CTTTTAATAAAACAGTTCCTCATATTGTGGTGACCAACATCTATGAAGTT
ATTTTCTTTGGTTATTTATAACTGTAATTTTGCTACTGTTATGAATTGTA
ATATAAAAGCTCTGTTTTTCCATGGTCTTAGGCAACTCCTGTGACCCT

Query= MSMg01no501_g04.g1 MSMg01no501_g04.g1 CHROMAT_FILE:
MSMg01no501_g04.g1 PHD_FILE: MSMg01no501_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:13 2005
         (612 letters)



>mm_chr3_117306849_117307860
          Length = 1012

 Score = 1145 bits (592), Expect = 0.0
 Identities = 607/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaattcgctcatttcatactcggccccatagttaagtctatatggcaatcgaaatgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaattcgctcatttcatactcggccccatagttaagtctatatggcaatcgaaatgaac 260

                                                                       
Query: 61  tagctatctccttaaggacacttttcgtgtcttcttcccagagactatattctactttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctatctccttaaggacacttttcgtgtcttcttcccagagactatattctactttgt 320

                                                                       
Query: 121 gccttgtggtagccacagtcctaagatcttggtttcaatattgctaagctttatatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttgtggtagccacagtcctaagatcttggtttcaatattgctaagctttatatctca 380

                                                                       
Query: 181 cattcaacaatatagtaatttgcatggtaaattctatttccaccccacctactaggctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattcaacaatatagtaatttgcatggtaaattctatttccaccccacctactaggctgc 440

                                                                       
Query: 241 tccttctttattcttgctcctcctcttaatcattttcctgatgttatgagaattctttcc 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttctcaattcttgctcctcctcttaatcattttcctgatgttatgagaattctttcc 500

                                                                       
Query: 301 catgtggatataaacaatgtttattccattcttacagagtccaagcaacatagcgacatt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatggatataaacaatgtttattccattcttacagagtccaagcaacatagcgacatt 560

                                                                       
Query: 361 tgttccactccagttcaccacaataaccaatatgtttcttggacttccagagcatgcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttccactccagttcaccacaataaccaatatgtttcttggacttccagagcatgcatg 620

                                                                       
Query: 421 atgctaagaaagtttgcatgattcatagccaacacgaatgatggactatataaataatat 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 atgctaagaaagtttgcatgattcatagccaatacgaatgatggactatataaataatat 680

                                                                       
Query: 481 ttctaattctgtgctcttttaataaaacagttcctcatattgtggtgaccaacatctatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 ttctaattctgtgctcttttaataaaacagttcctcatattgtggtgaccaacatatatg 740

                                                                       
Query: 541 aagttattttctttggttatttataactgtaattttgctactgttatgaattgtaatata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagttattttctttggttatttataactgtaattttgctactgttatgaattgtaatata 800

                       
Query: 601 aaagctctgttt 612
           ||||||||||||
Sbjct: 801 aaagctctgttt 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)