Query= MSMg01no501_j01.b1 MSMg01no501_j01.b1 CHROMAT_FILE:
MSMg01no501_j01.b1 PHD_FILE: MSMg01no501_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:25 2005
(649 letters)
>mm_chr3_150786689_150787737
Length = 1049
Score = 1123 bits (581), Expect = 0.0
Identities = 587/589 (99%)
Strand = Plus / Minus
Query: 5 gaattccaaggaaacagcaagtgtaagcgtaggtcattaaggctccagctaactaggagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattccaaggaaacagcaagtgtaagcgtaggtcattaaggctccagctaactaggagc 530
Query: 65 agactttccctgttgtcctaggttccaaagaagtttttagtccagcgaaggtattttata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agactttccctgttgtcctaggttccaaagaagtttttagtccagcgaaggtattttata 470
Query: 125 ctaggaagtatttcactcctgtacagaatttctccatggaacgggttatagaatgggttc 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 469 ctaggaagtatttcactcctgtacagaatttctgcatggaacgggttatagaatgggttc 410
Query: 185 ttgccttaagctttttttgtttgtttgttttatttaagcaagctgaaatatcacggggtt 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 ttgccttaagctttttttgtttgtttgttttatttgagcaagctgaaatatcacggggtt 350
Query: 245 gctcattattttatttctaatttcacagaaaacagggacatgagagagttgggcaggtga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gctcattattttatttctaatttcacagaaaacagggacatgagagagttgggcaggtga 290
Query: 305 aacggaagcccccgtgatgtttgctttctcagttgaattgcttcacaatgatcaagagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aacggaagcccccgtgatgtttgctttctcagttgaattgcttcacaatgatcaagagaa 230
Query: 365 acagtgctaacagggcctgccagccttatttgtttgtttgtttatttatttatttagatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acagtgctaacagggcctgccagccttatttgtttgtttgtttatttatttatttagatg 170
Query: 425 gatcttagtatgtaactcaggctggttacaaactaatgattctccttcatcttcctgatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gatcttagtatgtaactcaggctggttacaaactaatgattctccttcatcttcctgatt 110
Query: 485 gctgggaatacaggcaggatcctccacaccagctcatttagcacatctttattgttacat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gctgggaatacaggcaggatcctccacaccagctcatttagcacatctttattgttacat 50
Query: 545 tctatttagccacatcttttgaacaatcattaccgacagtgttgctgaa 593
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tctatttagccacatcttttgaacaatcattaccgacagtgttgctgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_j01.g1 MSMg01no501_j01.g1 CHROMAT_FILE:
MSMg01no501_j01.g1 PHD_FILE: MSMg01no501_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:25 2005
(613 letters)
>mm_chr3_150636346_150637358
Length = 1013
Score = 578 bits (299), Expect = e-169
Identities = 341/355 (96%), Gaps = 2/355 (0%)
Strand = Plus / Plus
Query: 1 ttgccctaacctccttcaaggacaaacttcattgacctggaaatatgaggaaaataaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccctaacctccttcaaggacaaacttcattgacctggaaatatgaggaaaataaacc 260
Query: 61 tctttcctcctaagctgtggtgtgggttttgtaacagccctacaatgaatctagagaggg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tctttcctcctaagctgtggtgtgggttttgtaacagccctacaatgaatctggagaggg 320
Query: 121 ctaaccctacacaacatggtttctgtacttg-tccaggtagtcagctctgaaagccgtct 179
||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |||
Sbjct: 321 ctaaccctacacaacatggtttctgtacttgctc-aggtactcagctctgaaagccttct 379
Query: 180 cattctatactcaattccaggagacaaaggcaaggaagagagtaaacaaatcaaagccct 239
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 tattctgcactcaattccaggagacaaaggcaaggaagtgagtaaacaaatcaaagccct 439
Query: 240 gcatttaaggatacaaatgtttacatgatgacaagcaaaataaaaaataaacagagtaag 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 gcatttaaggatacaaatgtttacatgacgacaagcaaaataaaaaataaacagagtaag 499
Query: 300 gaatcagagttaccttttcatgcccactgtctagagaagaacattacaggtgctc 354
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 500 gaatcagagttacctttttgtgtccactgtctagagaagagcattacaggtgctc 554
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 357 ttttcttcagggaaaaggactaagaaaggatccactgg 394
||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ttttcttcagggaaaaggactaagaaaggatccactgg 1013
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
