BAC Information

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BAC

Clone NameMSMg01-501J05
Chromosome3 (Build37)
Map Location 84,824,310 - 84,964,500
singlet/doubletdoublet
Overlap genenone
Upstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501J05.T7 (MSMg01no501_j05.b1)MSMg01-501J05.TJ (MSMg01no501_j05.g1)
ACCAG577138AG577139
length688680
length of high quality
(start - end)		546 (51 - 596)165 (57 - 221)
definitionCHROMAT_FILE: MSMg01no501_j05.b1 PHD_FILE: MSMg01no501_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:26 2005CHROMAT_FILE: MSMg01no501_j05.g1 PHD_FILE: MSMg01no501_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,824,310 - 84,824,854)(84,964,336 - 84,964,500)
sequence
GACTCACTATAGTCAGNAAATCCGCGGAATTCAATTAGTCTTTCGTTGCC
ATGCCAATGCAAGCATCACCCTTCCACCTACTCCACCATCAACACATTTG
AATAAGTAACAATGATAATACCATGCACTAAAAAAATGCTATTTTTAAAA
AAACTTAAATGTACTTCTGTCAAAAGTCTGGTTTTTCAGAAATAATTGCT
GTAGGCCAGATAAAGATTTGCATAGGATTCCTAAAATGGGCTGAATATCA
TCACAGAAGAGAAATATCTGTGATTATAAAGAGAGTCCTTGAGATTGGGG
GACTTGGGATGGGAAGGCAAGGTTCTCCTAATATTCAGAGGTGATAGAGA
TGAAGTTGGGACAGATAGCTCTCACTTCAGCACCACCCTCCTCACACCCT
GCCGCCTGACCCAGGTCCCCAGTCTTCACCATACCCTACCCAAGTGTTAA
TTGATATTTGTAATTTGATGCTTTGTGGCTACAGCTTTAACAAGTGTATT
TTAGGGACCTCAGAATTAGTGTCTCAGAATCGATTCTGAGAAAACCATTA
CTGACATATAATAAGATTTATAATAGAAAAAGCAAAAATAAAACCCAAAC
AAAAAATAGAAGTAGTCTAAAATATTCCAGCCATTGTGTACCCGCATGCT
AGGATGTGGCTGTTAAAAATGAGGTTGTCAGAGAACAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCGAGACAGGAGCTGGAAGGAAGAACATTATGGTAGACACCATT
ATAGCTGCTGTTCTTGGTATTCGTTTCCTGTATCTTCCCGACTCACCAAG
TGTTGGCTTGAGCCATGTCCATGGAGCTGTCATGGATTATCAAGGACCAT
GAGAGGGCATCGGGTCTTGGAATAAGAATNGNAAGTGGCNNTTGTGNNTC
CCAGCTCTCATGGGTTTATTCTGCAAACTGGGCCTCTCACACAGGAAAAA
GGGTNTNNNNNNNTCTCCCCCACCNNNNNNNCCCCCTTTCCCCCCCCCCT
TTTCCCCCCCNNTTTTTTTTTCTTTTTTTTGTATTGTTGCCTCTTTNTTT
TTAGGTCGTTGGTATGTTTCATTCGTACCCCCCCTATTTTCTTCTGCCTC
CAACTTTTTCCCCACTTCTTATCTTTTTTATGTTTTTTTTNNNNCCCTTT
TCTCCTCTCCCCTGGGGGGGGGGGAAAAATAATAAATAATTTCTATTTTA
AAAGAAAAAAAAAAAAAANAANAAAAAAAATAAAGGGGGCGGTACCATAA
ATTATATTTTACAACCGAAATAAAACCAACAAAAAAATAAAAATAGAGGG
TGGGGGGGGGCTGTTTCTCCTCTCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_j05.b1 MSMg01no501_j05.b1 CHROMAT_FILE:
MSMg01no501_j05.b1 PHD_FILE: MSMg01no501_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:26 2005
         (546 letters)



>mm_chr3_84824110_84825055
          Length = 946

 Score = 1031 bits (533), Expect = 0.0
 Identities = 542/545 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccaatgcaagcatcacccttccacctactccaccatcaacacatttgaataagtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgccaatgcaagcatcacccttccacctactccaccatcaacacatttgaataagtaac 260

                                                                       
Query: 61  aatgataataccatgcactaaaaaaatgctatttttaaaaaaacttaaatgtacttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgataataccatgcactaaaaaaatgctatttttaaaaaaacttaaatgtacttctgt 320

                                                                       
Query: 121 caaaagtctggtttttcagaaataattgctgtaggccagataaagatttgcataggattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaagtctggtttttcagaaataattgctgtaggccagataaagatttgcataggattc 380

                                                                       
Query: 181 ctaaaatgggctgaatatcatcacagaagagaaatatctgtgattataaagagagtcctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ctaaaatgggctgaatatcatcacagaagagaaatatctgtgattataaagacagtcctt 440

                                                                       
Query: 241 gagattgggggacttgggatgggaaggcaaggttctcctaatattcagaggtgatagaga 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 441 gagattgggggacttgggatgggaaggcaagcttctcctaatattcagaggtgatggaga 500

                                                                       
Query: 301 tgaagttgggacagatagctctcacttcagcaccaccctcctcacaccctgccgcctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagttgggacagatagctctcacttcagcaccaccctcctcacaccctgccgcctgac 560

                                                                       
Query: 361 ccaggtccccagtcttcaccataccctacccaagtgttaattgatatttgtaatttgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggtccccagtcttcaccataccctacccaagtgttaattgatatttgtaatttgatg 620

                                                                       
Query: 421 ctttgtggctacagctttaacaagtgtattttagggacctcagaattagtgtctcagaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgtggctacagctttaacaagtgtattttagggacctcagaattagtgtctcagaat 680

                                                                       
Query: 481 cgattctgagaaaaccattactgacatataataagatttataatagaaaaagcaaaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgattctgagaaaaccattactgacatataataagatttataatagaaaaagcaaaaata 740

                
Query: 541 aaacc 545
           |||||
Sbjct: 741 aaacc 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_j05.g1 MSMg01no501_j05.g1 CHROMAT_FILE:
MSMg01no501_j05.g1 PHD_FILE: MSMg01no501_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:26 2005
         (165 letters)



>mm_chr3_84964136_84964700
          Length = 565

 Score =  304 bits (157), Expect = 2e-87
 Identities = 163/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgagacaggagctggaaggaagaacattatggtagacaccattatagctgctgttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccgagacaggagctggaaggaagaacattatggtagacaccattatagctgctgttcttg 306

                                                                       
Query: 61  gtattcgtttcctgtatcttcccgactcaccaagtgttggcttgagccatgtccatggag 120
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtattcctttcctgtatcttcctgactcaccaagtgttggcttgagccatgtccatggag 246

                                                        
Query: 121 ctgtcatggattatcaaggaccatgagagggcatcgggtcttgga 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctgtcatggattatcaaggaccatgagagggcatcgggtcttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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