Query= MSMg01no501_j15.b1 MSMg01no501_j15.b1 CHROMAT_FILE:
MSMg01no501_j15.b1 PHD_FILE: MSMg01no501_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:27 2005
(580 letters)
>mm_chr3_97723573_97724552
Length = 980
Score = 727 bits (376), Expect = 0.0
Identities = 388/392 (98%)
Strand = Plus / Minus
Query: 1 cactgctcccaagttttgaaagtctgtttcctggtcttccttggtctttgctttatcagt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 392 cactgctcccaagttttgaaagtctgtttcctggtcttcctcggtctttgctttatcagt 333
Query: 61 gatgtatgatggcacactgctatagaaaatcccaggagcatggcagcagagatgcaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gatgtatgatggcacactgctatagaaaatcccaggagcatggcagcagagatgcaagga 273
Query: 121 ccaggagtctaaggccagccgctgctgcttagtgaaaccctctcaaaggaaagaaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccaggagtctaaggccagccgctgctgcttagtgaaaccctctcaaaggaaagaaaaaga 213
Query: 181 aacaatgctttctgtagggatagttctgatgctagagtcctgttccccgattggttcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aacaatgctttctgtagggatagttctgatgctagagtcctgttccccgattggttcttg 153
Query: 241 atctgtcagtaaagaatccatgggccagttgctgggtggaagagacaggcgggacagata 300
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 152 atctgtcagtaaagaagccatgggccagttgctgggtggaagagataggcgggacagata 93
Query: 301 gggatttctgggtccatgcttctgatagagaaaagttgaacagccatgtgagatctcgaa 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 92 gggatttctgggtccatgcttctgatagagaaaagttgaccagccatgtgagatctcgaa 33
Query: 361 atggagtggccacatagaccactcctacagga 392
||||||||||||||||||||||||||||||||
Sbjct: 32 atggagtggccacatagaccactcctacagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_j15.g1 MSMg01no501_j15.g1 CHROMAT_FILE:
MSMg01no501_j15.g1 PHD_FILE: MSMg01no501_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:27 2005
(634 letters)
>mm_chr3_97591991_97593024
Length = 1034
Score = 1195 bits (618), Expect = 0.0
Identities = 630/634 (99%), Gaps = 1/634 (0%)
Strand = Plus / Plus
Query: 1 taagactgtccccataatgctctggagtctatctatacctatccctctgaagctctaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagactgtccccataatgctctggagtctatctatacctatccctctgaagctctaaag 260
Query: 61 ggcaagatttgcttctaaacaatatgcagggcaaacacgctcagagtcttagcttcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaagatttgcttctaaacaatatgcagggcaaacacgctcagagtcttagcttcagca 320
Query: 121 attggacaagaaaaagacataaaagaaatactaatagaacaggaagaagtcagactattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggacaagaaaaagacataaaagaaatactaatagaacaggaagaagtcagactattt 380
Query: 181 gcagatggcatcattctttactcaatggaccctattgagtctattagaaaactcttggac 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagatggcatcattctttacttaatggaccctattgagtctattagaaaactcttggac 440
Query: 241 ctagttaatataggagagttgcaaaatcgatatttaaaaagaaaagaaaacccagtggct 300
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ctagttaacaaaggagagttgcaaaatcgatatttaaaaa-aaaagaaaacccagtggct 499
Query: 301 ttcatttatacagtctactccctgaaaaagaattaggaaaattattccattcaccagccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcatttatacagtctactccctgaaaaagaattaggaaaattattccattcaccagccc 559
Query: 361 cttagaaagtatttagaaataaatataaccaaagaagtgaaagacctctaagatgaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttagaaagtatttagaaataaatataaccaaagaagtgaaagacctctaagatgaaatt 619
Query: 421 ttcatgttattaaaaaaaggaaatcacagaagatattagatattcgaaaatattttgtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcatgttattaaaaaaaggaaatcacagaagatattagatattcgaaaatattttgtgc 679
Query: 481 tctcaataggaagaattaatactatgataatgtttatatcactaaaattaacatacagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctcaataggaagaattaatactatgataatgtttatatcactaaaattaacatacagaa 739
Query: 541 ttggtgcaataactattaaaatttccatgtcatatctcataggtttagaaaaaaataaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttggtgcaataactattaaaatttccatgtcatatctcataggtttagaaaaaaataaaa 799
Query: 601 gcagagtttatctaggaccacagaagaatagaca 634
||||||||||||||||||||||||||||||||||
Sbjct: 800 gcagagtttatctaggaccacagaagaatagaca 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
