Query= MSMg01no501_j16.b1 MSMg01no501_j16.b1 CHROMAT_FILE:
MSMg01no501_j16.b1 PHD_FILE: MSMg01no501_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:28 2005
(231 letters)
>mm_chr3_25892110_25892741
Length = 632
Score = 375 bits (194), Expect = e-108
Identities = 225/248 (90%), Gaps = 23/248 (9%)
Strand = Plus / Plus
Query: 5 gaattctcagaag-attcttt-atattaatatcatatgtaaaatttgaattcttaattct 62
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagaagaatt-tttcatattaatatcatatgtaaaatttgaattcttaattct 263
Query: 63 taactttcatgagcagcctagaatgtgttaaaaggaaaaatatctaagggttgggaactt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taactttcatgagcagcctagaatgtgttaaaaggaaaaatatctaagggttgggaactt 323
Query: 123 aggatttgcaccttcattatatctatttaaagatatgtct-------------------- 162
||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggatttgcaccttcattatatctatttaaagatatgtcttcaactctgtgccccagggt 383
Query: 163 agatgaagaccaggaccaggaagcaggagtgggtgggttggtaagcagggggagggggag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatgaagaccaggaccaggaagcaggagtgggtgggttggtaagcagggggagggggag 443
Query: 223 gggaaaga 230
||||||||
Sbjct: 444 gggaaaga 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 632
Length adjustment: 9
Effective length of query: 222
Effective length of database: 623
Effective search space: 138306
Effective search space used: 138306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no501_j16.g1 MSMg01no501_j16.g1 CHROMAT_FILE:
MSMg01no501_j16.g1 PHD_FILE: MSMg01no501_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:28 2005
(634 letters)
>mm_chr3_25937013_25938045
Length = 1033
Score = 756 bits (391), Expect = 0.0
Identities = 397/399 (99%), Gaps = 1/399 (0%)
Strand = Plus / Minus
Query: 236 ttaaggtatgtgccccatagtattacatctccttgtatgagagctatattttctagtgtt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ttaaggtatgtgccccatagtattacatctccttgtatgagagctatattttctagtgtt 974
Query: 296 ttctggtataaatttgtgtagacttacatatagtaactgcaccaatttacattccaatct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ttctggtataaatttgtgtagacttacatatagtaactgcaccaatttacattccaatct 914
Query: 356 actgtaaataatagttcctatttatctatgtttgccagcttttgcttcacccatttctgg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 actgtaaataatagttcctatttatctatgtttgccagcttttgcttcacccatttctgg 854
Query: 416 atgatagccactgtaattggcctaggaacattactgatttatgggtggtgattaaaatat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 atgatagccactgtaattggcctaggaacattactgatttatgggtggtgattaaaatat 794
Query: 476 aatatatatcctgatttatagatgaaatttcattatgtgaaaaccaaacttgtcaaatgc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aatatatatcctgatttatagatgaaatttcattatgtgaaaaccaaacttgtcaaatgc 734
Query: 536 aacaaaacttttttgaatggaattaaaaaataattgtagttaggtacatataacatatta 595
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 733 aacaaaactttcttgaatggaattaaaaa-taattgtagttaggtacatataacatatta 675
Query: 596 gatattatggatttatattagatgtttttatataattag 634
|||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gatattatggatttatattagatgtttttatataattag 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1033
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1023
Effective search space: 638352
Effective search space used: 638352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
