Query= MSMg01no501_k06.b1 MSMg01no501_k06.b1 CHROMAT_FILE:
MSMg01no501_k06.b1 PHD_FILE: MSMg01no501_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
(622 letters)
>mm_chr3_9275872_9276893
Length = 1022
Score = 1106 bits (572), Expect = 0.0
Identities = 607/622 (97%), Gaps = 8/622 (1%)
Strand = Plus / Minus
Query: 1 attgaatgagaatgaaaggacttagagaagatgcagagaccaattacaaagcaaccctga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 622 attgaatgagaatgaaaggacttagagaagatgcagagaccaattacaaagcaatcctga 563
Query: 61 gccccaggctgtgcatttgctgcccaatgcctgcctgccctttgcaggggtcgcggtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gccccaggctgtgcatttgctgcccaatgcctgcctgccctttgcaggggtcgcggtgca 503
Query: 121 gaaaagaagagaggaaagggtgggcggaaagcagttctcaggaaccaaagctgagggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaaagaagagaggaaagggtgggcggaaagcagttctcaggaaccaaagctgagggctg 443
Query: 181 atatgtacagtagtgtagcaagcacaaggattggtggcagaattagtattgtgcaaagat 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 ataggtacagtagtgtagcaagcacaaggattggtggcagaattagtattgtggaaagat 383
Query: 241 tagctaggtcatctttcgatggcagcagagcaaactcgaggtgggacagagggtacagag 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tagctaggtcatcttccgatggcagcagagcaaactcgaggtgggacagagggtacagag 323
Query: 301 tgacatttagtctagagcattgagtctaacacacctaagaagtagtgtttagatggttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgacatttagtctagagcattgagtctaacacacctaagaagtagtgtttagatggttaa 263
Query: 361 aagggcagcttgctttcccctaacaggtcattctgctcttcatccatgtactgggtttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagggcagcttgctttcccctaacaggtcattctgctcttcatccatgtactgggtttta 203
Query: 421 a-----ata-a--agcactaatagggacctttgtcaaaagggttagccggttggcagtaa 472
| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 202 aagaccatataccagcactaatagggacctttgtcaaaagcgttagccggttggcagtaa 143
Query: 473 ccaacctgtattgtaataagtcaactaagccaactaaataattctaactaaacgttgaaa 532
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 142 ccaacctgtattgtaataagtcaactaagccaactaagtaattctaactaaacgttgaaa 83
Query: 533 actgactttctgtggggactttttttcttttttgtaaaaatgctcaaattaaataaatgc 592
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 82 actgactttctgtggggactttttttcttttttgtaaaagtgctcaaattaaataaatgc 23
Query: 593 caccaaatgtgaattttattat 614
||||||||||||||||||||||
Sbjct: 22 caccaaatgtgaattttattat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k06.g1 MSMg01no501_k06.g1 CHROMAT_FILE:
MSMg01no501_k06.g1 PHD_FILE: MSMg01no501_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
(248 letters)
>mm_chr3_9108107_9108754
Length = 648
Score = 472 bits (244), Expect = e-138
Identities = 247/248 (99%)
Strand = Plus / Plus
Query: 1 caaagtcccgttcaggctagtttccaagttgccgcaatcctctgacctcacttccttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtcccgttcaggctagtttccaagttgccgcaatcctctgacctcacttccttgag 260
Query: 61 ttgcaaacacagttctcatgtctggcagttgttgttagcaatcctgaccatgaagaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcaaacacagttctcatgtctggcagttgttgttagcaatcctgaccatgaagaaaat 320
Query: 121 tctccatgtcttcaaagtcaccatttccacctccctggcgacagactctgcgagagtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccatgtcttcaaagtcaccatttccacctccctggcgacagactctgcgagagtcac 380
Query: 181 tatgccatgtttatgtgagaactggggtaaggggcacagcttagtgaacaccaggcaaca 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataccatgtttatgtgagaactggggtaaggggcacagcttagtgaacaccaggcaaca 440
Query: 241 ctctacca 248
||||||||
Sbjct: 441 ctctacca 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|