BAC Information

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BAC

Clone NameMSMg01-501K06
Chromosome3 (Build37)
Map Location 9,108,307 - 9,276,493
singlet/doubletdoublet
Overlap geneZbtb10
Upstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886
Downstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501K06.T7 (MSMg01no501_k06.b1)MSMg01-501K06.TJ (MSMg01no501_k06.g1)
ACCAG577188AG577189
length737745
length of high quality
(start - end)
622 (68 - 689)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no501_k06.b1 PHD_FILE: MSMg01no501_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:30 2005CHROMAT_FILE: MSMg01no501_k06.g1 PHD_FILE: MSMg01no501_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,275,872 - 9,276,493)(9,108,307 - 9,108,554)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATGCGCGGAATTCTAAAA
ATCTATTTCATGATGTCATTGAATGAGAATGAAAGGACTTAGAGAAGATG
CAGAGACCAATTACAAAGCAACCCTGAGCCCCAGGCTGTGCATTTGCTGC
CCAATGCCTGCCTGCCCTTTGCAGGGGTCGCGGTGCAGAAAAGAAGAGAG
GAAAGGGTGGGCGGAAAGCAGTTCTCAGGAACCAAAGCTGAGGGCTGATA
TGTACAGTAGTGTAGCAAGCACAAGGATTGGTGGCAGAATTAGTATTGTG
CAAAGATTAGCTAGGTCATCTTTCGATGGCAGCAGAGCAAACTCGAGGTG
GGACAGAGGGTACAGAGTGACATTTAGTCTAGAGCATTGAGTCTAACACA
CCTAAGAAGTAGTGTTTAGATGGTTAAAAGGGCAGCTTGCTTTCCCCTAA
CAGGTCATTCTGCTCTTCATCCATGTACTGGGTTTTAAATAAAGCACTAA
TAGGGACCTTTGTCAAAAGGGTTAGCCGGTTGGCAGTAACCAACCTGTAT
TGTAATAAGTCAACTAAGCCAACTAAATAATTCTAACTAAACGTTGAAAA
CTGACTTTCTGTGGGGACTTTTTTTCTTTTTTGTAAAAATGCTCAAATTA
AATAAATGCCACCAAATGTGAATTTTATTATTCCACTTGTTTCCAAGAAC
AGAAATTTAATAAATAAGACTACAGATCTGGGGCTGG
CGATGATATGNGAGGCCTGGCGGCCGCCTGGCCTTTTCAAAATGGTGACC
TATAGAAGGATCTTTCGAAATAACTTCAAAGTCCCGTTCAGGCTAGTTTC
CAAGTTGCCGCAATCCTCTGACCTCACTTCCTTGAGTTGCAAACACAGTT
CTCATGTCTGGCAGTTGTTGTTAGCAATCCTGACCATGAAGAAAATTCTC
CATGTCTTCAAAGTCACCATTTCCACCTCCCTGGCGACAGACTCTGCGAG
AGTCACTATGCCATGTTTATGTGAGAACTGGGGTAAGGGGCACAGCTTAG
TGAACACCAGGCAACACTCTACCAATTTTTGTGACAGACAGCCTTGGCCT
CTCTTAATCTTCCCTTCTTCATTTCTTTTTCCCTCTTCCTCCCTCTCTCC
TTCCCCCTCCTCTAAGATTCAAGTGGGCCTTGAACTTGCGACGTAGCTGA
GGATGACCTTAAACTTCCGATTCTTCCTGGCTCTTGCCCCCTCTGTCTGT
GCCCCTTCCCAAAGTTTTAACCTTTTCTGGTTTTTGAAAAGGGTTCCCAA
AACTGGGCCTGAAACTGGGGGGAATTTTTCCGGCCCTTGCTGCCAAAAAA
AGGCTATTTCCTGTGGGGAACTGCCATGCCTTGGGTCCCCCTTTAGGTTT
GGACGGGATTTTTTTCCGGAATATATTGGTTTCCTCCAAAAAAAATTCCA
ACCGAAAATTCTCAGGCCCTGAAAAGGGACTGGAAGCCCTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_k06.b1 MSMg01no501_k06.b1 CHROMAT_FILE:
MSMg01no501_k06.b1 PHD_FILE: MSMg01no501_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
         (622 letters)



>mm_chr3_9275872_9276893
          Length = 1022

 Score = 1106 bits (572), Expect = 0.0
 Identities = 607/622 (97%), Gaps = 8/622 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaatgagaatgaaaggacttagagaagatgcagagaccaattacaaagcaaccctga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 622 attgaatgagaatgaaaggacttagagaagatgcagagaccaattacaaagcaatcctga 563

                                                                       
Query: 61  gccccaggctgtgcatttgctgcccaatgcctgcctgccctttgcaggggtcgcggtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gccccaggctgtgcatttgctgcccaatgcctgcctgccctttgcaggggtcgcggtgca 503

                                                                       
Query: 121 gaaaagaagagaggaaagggtgggcggaaagcagttctcaggaaccaaagctgagggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaaagaagagaggaaagggtgggcggaaagcagttctcaggaaccaaagctgagggctg 443

                                                                       
Query: 181 atatgtacagtagtgtagcaagcacaaggattggtggcagaattagtattgtgcaaagat 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 ataggtacagtagtgtagcaagcacaaggattggtggcagaattagtattgtggaaagat 383

                                                                       
Query: 241 tagctaggtcatctttcgatggcagcagagcaaactcgaggtgggacagagggtacagag 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tagctaggtcatcttccgatggcagcagagcaaactcgaggtgggacagagggtacagag 323

                                                                       
Query: 301 tgacatttagtctagagcattgagtctaacacacctaagaagtagtgtttagatggttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgacatttagtctagagcattgagtctaacacacctaagaagtagtgtttagatggttaa 263

                                                                       
Query: 361 aagggcagcttgctttcccctaacaggtcattctgctcttcatccatgtactgggtttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagggcagcttgctttcccctaacaggtcattctgctcttcatccatgtactgggtttta 203

                                                                       
Query: 421 a-----ata-a--agcactaatagggacctttgtcaaaagggttagccggttggcagtaa 472
           |     ||| |  ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 202 aagaccatataccagcactaatagggacctttgtcaaaagcgttagccggttggcagtaa 143

                                                                       
Query: 473 ccaacctgtattgtaataagtcaactaagccaactaaataattctaactaaacgttgaaa 532
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 142 ccaacctgtattgtaataagtcaactaagccaactaagtaattctaactaaacgttgaaa 83

                                                                       
Query: 533 actgactttctgtggggactttttttcttttttgtaaaaatgctcaaattaaataaatgc 592
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 82  actgactttctgtggggactttttttcttttttgtaaaagtgctcaaattaaataaatgc 23

                                 
Query: 593 caccaaatgtgaattttattat 614
           ||||||||||||||||||||||
Sbjct: 22  caccaaatgtgaattttattat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no501_k06.g1 MSMg01no501_k06.g1 CHROMAT_FILE:
MSMg01no501_k06.g1 PHD_FILE: MSMg01no501_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:30 2005
         (248 letters)



>mm_chr3_9108107_9108754
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtcccgttcaggctagtttccaagttgccgcaatcctctgacctcacttccttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtcccgttcaggctagtttccaagttgccgcaatcctctgacctcacttccttgag 260

                                                                       
Query: 61  ttgcaaacacagttctcatgtctggcagttgttgttagcaatcctgaccatgaagaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcaaacacagttctcatgtctggcagttgttgttagcaatcctgaccatgaagaaaat 320

                                                                       
Query: 121 tctccatgtcttcaaagtcaccatttccacctccctggcgacagactctgcgagagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccatgtcttcaaagtcaccatttccacctccctggcgacagactctgcgagagtcac 380

                                                                       
Query: 181 tatgccatgtttatgtgagaactggggtaaggggcacagcttagtgaacaccaggcaaca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataccatgtttatgtgagaactggggtaaggggcacagcttagtgaacaccaggcaaca 440

                   
Query: 241 ctctacca 248
           ||||||||
Sbjct: 441 ctctacca 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)