XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTT
TGACCTGTGTTAGCTTCTTACCATGTGGGTTCTTGTTTTTTCCCTCCTAC
CAGGTTTGGCTGTCTAATAAAGATGTAGAGGGAAGGCACTTGACAAGGAC
AGCTTGTTTAGTTCAGCTTGTTTTCAGTTTCTCCAGTAATGACAGAAGTA
AAATAGAAAACATCTAACTGAGGAGCCAGTTCTATAGTTTGAGTAGTCCC
TAGTATGAGAAAATCTCTGAGGTATAATTTCATCGAAAGTATTTTCATGG
CATTGTACTATCATGTTTTAATGACCCCCTTTTTTTTTCAGTTCCAAAAA
CTGTTAACACTAGTGACCATGACTGGTTTGGGCATTATTTCCTCAACTCA
CATTCTGTGAAGGTAATAGGAGTAAGATGGGGAAAAGCTACTTAGGTCTG
TGGAGAGAAGCATGAGGCTCTGCAGCTAGATGGTCAGCCTCTGTGTAATT
GAGATTTGACTTTTTACCAGGTTGGGGATTTAGTTGAATATTTTATGTGT
GTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNTTNNNNNNTTT
TTTTTTTTTTTTTTTTNTTTTTTNTTNNNTTTTTTTTTTTTTNTTTNNTT
TTTTTTTTTTNTTNTTTTNTTTTTTNTTTTNNTTTTTNTTGGTNTTNTTT
NTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTGATGAATTCTCAGACTGCTTTTTTGAGTAAAGCATTTG
TCACATCCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATG
AATTCTCAGACTGCCTTTTTCAGTAAAGCATTTGTCACATTCACTGCATT
TGTAAGGTTTCTCTCCTGTATGAATTTTCTGATGATTATTAAGATGGCAT
TTGTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCT
TGTATGAATTCTCTGATGAATTATCAGATTGCCTTTTGTAGTAAAGCATA
TGTCACATTCACTACATTTGTACGGTTTCTCTCCTGTATGAATTCTCTGA
TGAATACCAAGATGGAATTTTCGGGTAAAGCATTTGTCACATTCACTACA
TTTGTAAGATTTCTCTCCTGTATGAATTCTCTGATGGATTCTCAAATTAA
AGTTGTGGGTAAAGCATTTGTCACATTGACTACATTTGTGAGGTGTCTCT
CCTTTATGAATTCTCTGATGCATAGTAAGATTGAATTTGTGTTTAAAACA
TTTGTCACATTCACTACATTTGTAAATTATCTCTTCTGTATGAATTCCCT
GATGAATACTAAGATGGATCTGATGGGTAAGGCATTTGTCACTTTTACT

Query= MSMg01no502_b09.b1 MSMg01no502_b09.b1 CHROMAT_FILE:
MSMg01no502_b09.b1 PHD_FILE: MSMg01no502_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:02 2005
         (538 letters)



>mm_chr3_142053834_142054784
          Length = 951

 Score =  625 bits (323), Expect = 0.0
 Identities = 487/547 (89%), Gaps = 21/547 (3%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctcttttgacctgtgttagcttcttaccatgt-gggttcttgttttttccctcctac 65
           ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||
Sbjct: 720 attctcttttgacctgtgttaacttgttaccatgtggggttcttgttttttccctcttac 661

                                                                       
Query: 66  caggtttggctgtctaataaagatgtagagggaaggcacttgacaaggacagcttgttta 125
           ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||
Sbjct: 660 caggtttggctgtctaatagagatgcagagggaaggcatttgacaaggacagcttgttta 601

                                                                       
Query: 126 gttcagcttgttttcagtttctccagtaatgaca-gaagtaaaatagaaaacatctaact 184
           ||||||||||||||||||||||||| || | ||| || ||||||||||||||||| ||||
Sbjct: 600 gttcagcttgttttcagtttctccactagtaacaaga-gtaaaatagaaaacatccaact 542

                                                                       
Query: 185 gaggagccagttctatagtttg-agtagtccctagtatgagaaaa-tctctgaggtataa 242
           ||||||||||| |||| ||||| | ||| ||||||| |||||||| ||| |||| |  ||
Sbjct: 541 gaggagccagtcctatggtttggaatagcccctagtttgagaaaaatctttgagctccaa 482

                                                                       
Query: 243 tttcatcga-aagta-ttttcatggcattgtactatcatgttttaatgaccccctttttt 300
           |||| || | ||||| |||| |||| ||| ||||||||||||||||||||||  ||||||
Sbjct: 481 tttcttc-ataagtactttt-atggaattttactatcatgttttaatgaccct-tttttt 425

                                                                       
Query: 301 tttcagttccaaaaactgt----taacactagtgaccatgactggtttgggcattatttc 356
           |||||||||||||||||||    ||||||||||||||||||||||||||| |||||||||
Sbjct: 424 tttcagttccaaaaactgtctgttaacactagtgaccatgactggtttggacattatttc 365

                                                                       
Query: 357 ctcaactcacattctgtgaaggtaatag----gagtaagatggggaaaagctacttaggt 412
           ||||||||||||||||||  ||||||||    ||||||||||   ||||||||| |||| 
Sbjct: 364 ctcaactcacattctgtggcggtaatagtcaggagtaagatgaacaaaagctacataggc 305

                                                                       
Query: 413 ctgtggagagaagca---tgaggctctgcagctagatggtcagcctctgtgtaattgaga 469
           |||||||||| || |   |||||||||||||| ||||||||||||| || ||||||||||
Sbjct: 304 ctgtggagaggagaagggtgaggctctgcagccagatggtcagcctatgagtaattgaga 245

                                                                       
Query: 470 tttgactttttaccaggttggggatttagttgaatattttatgtgtgtgtgtgtgtgtgt 529
           |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 244 tttgtctttttaccaggttggggatttagttgaatattgtgtgtgtgtgtgtgtgtgtgt 185

                  
Query: 530 gtgtgtg 536
           |||||||
Sbjct: 184 gtgtgtg 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 951
Length adjustment: 10
Effective length of query: 528
Effective length of database: 941
Effective search space:   496848
Effective search space used:   496848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)