BAC Information

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BAC

Clone NameMSMg01-502B19
Chromosome3 (Build37)
Map Location 87,186,851 - 87,335,102
singlet/doubletdoublet
Overlap geneFcrl1, Fcrl5, Etv3
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l
Downstream geneEG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502B19.T7 (MSMg01no502_b19.b1)MSMg01-502B19.TJ (MSMg01no502_b19.g1)
ACCAG577546AG577547
length722738
length of high quality
(start - end)		586 (18 - 603)636 (58 - 693)
definitionCHROMAT_FILE: MSMg01no502_b19.b1 PHD_FILE: MSMg01no502_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:04 2005CHROMAT_FILE: MSMg01no502_b19.g1 PHD_FILE: MSMg01no502_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,334,616 - 87,335,102)(87,186,851 - 87,187,486)
sequence
CTCACTATTTCGAGAGGATCCGCGGAATTCACTAAATTTCACCAAAGTAC
CTCTACTAAGTAGATGTTTAATAATGTCATTTTCCTTCGTCAGCATTATG
TTAATCTTGAACACTTGGTCTATATGGGCAAAAGTTCTCTGTAAACAAAT
GATTCTGCTTCGTTGGTCTTATCTATACCAAGAAACCAACAGCCTAAAGG
GACGGCTCACTGTTGTGCTTTTCCTGGGATTACTTTGTTATTTTCTCTTT
TTTTTTTTTTGTACTGACGGTTGAAGCCACAGCCTTATACATGCCAGGCA
GTGCTGTTCTGAGCTATGGCACCCCGGGACTTTCTGATTACCATCTTGAA
CCTATTTAAGATCACCTGTGGTTTAAGAGCTTTGGGTGTCTCAGGTGTGG
TGTGCCAGACCACTAACTACTGTTAGGTTTGCAGACCAGAAGAACTTCTA
CAGTCAGAGTCCATGATTCCTTGCCTTGGAAAATCGGATTACTTCTAGGC
TGGATGGACATTTTAGTCAAGTTGCCTAAGTGGTTGGACTTCTGGGCTTT
CAAGTGATTGAAAAGGGATCAAAGAACAAGACCAATGTATCGGGAGCTGG
AGCGAAAGCGTGTGAGGACCAACACGCTACTTCAAGACTGATGGCTGTCT
ACCTGCAGACCTACTGTCTAGAGGCTCACAGGGGAAGAAGCCAGAGTGAG
AAACAAGAAACAATATTCCTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTGACACAAGCCTTGGACTACAGGACAGAACTCCAGACTCCT
GCTGTGTCTGCCTTCTTTCTTCTTGCTAGGTTGGCCCCATCAGGAGAGAG
GGTTGCAGGTGCCTAGCCCCTCCCTTTGTCTGCTCAGTTCCAAATGCTGA
GAAGTTATAAATCCAATGGGGATTACAGATGTCTACTGAGAGAAGATGTA
GGGTAGTTCATACACGAGCAGTTGCTAACTGTAGGTGTAACTGGTATCTA
ATATGATTCTACAAAATTGTAGGAAGGGTCTGAGGTTATACACACTGAAC
TAGGACTCCCCAGAGACCCAGAGGACTCAGTATTTTCATCTGGCAAATGT
TTTCATTCCTAACAGGGAAACTATTAAAGTCTCCCAAATTGAGAGGTTAT
CAGGGTTAAGCAAATGCCCAAAGAGACTGTGGAACTCATGGGCTGATGGG
ACTGTGAGGAGGCTGAGGGAAGCACCTACATCGAAAGAGACACGAAACCC
CAGAGCACGCATCTGTATGACTTAAGACATGTGCTAGACTTTCATTTCAT
CCCACATACTCTTAAGAGGTTTGTATAGATGTTCTGAGTCAAAGGACCTG
GAGTGTGTGGGTGATGGGTTCAGGGCATTTCCAGGCAAGTGTGCCCCACC
CTCCTTTCTCCATCAAGAACTGCTACAGGAGGCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_b19.b1 MSMg01no502_b19.b1 CHROMAT_FILE:
MSMg01no502_b19.b1 PHD_FILE: MSMg01no502_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
         (586 letters)



>mm_chr3_87334117_87335102
          Length = 986

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Minus

                                                                       
Query: 100 ggtctatatgggcaaaagttctctgtaaacaaatgattctgcttcgttggtcttatctat 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ggtctatatgggcaaaagttctctgtaaacaaatgattctgcttcgttggtcttatctat 927

                                                                       
Query: 160 accaagaaaccaacagcctaaagggacggctcactgttgtgcttttcctgggattacttt 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 accaagaaaccaacagcctaaagggacggctcactgttgtgcttttcctgggattacttt 867

                                                                       
Query: 220 gttattttctctttttttttttttgtactgacggttgaagccacagccttatacatgcca 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gttattttctctttttttttttttgtactgacggttgaagccacagccttatacatgcca 807

                                                                       
Query: 280 ggcagtgctgttctgagctatggcaccccgggactttctgattaccatcttgaacctatt 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggcagtgctgttctgagctatggcaccccgggactttctgattaccatcttgaacctatt 747

                                                                       
Query: 340 taagatcacctgtggtttaagagctttgggtgtctcaggtgtggtgtgccagaccactaa 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 taagatcacctgtggtttaagagctttgggtgtctcaggtgtggtgtgccagaccactaa 687

                                                                       
Query: 400 ctactgttaggtttgcagaccagaagaacttctacagtcagagtccatgattccttgcct 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctactgttaggtttgcagaccagaagaacttctacagtcagagtccatgattccttgcct 627

                                                                       
Query: 460 tggaaaatcggattacttctaggctggatggacattttagtcaagttgcctaagtggttg 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tggaaaatcggattacttctaggctggatggacattttagtcaagttgcctaagtggttg 567

                                                                       
Query: 520 gacttctgggctttcaagtgattgaaaagggatcaaagaacaagaccaatgtatcgggag 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gacttctgggctttcaagtgattgaaaagggatcaaagaacaagaccaatgtatcgggag 507

                  
Query: 580 ctggagc 586
           |||||||
Sbjct: 506 ctggagc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_b19.g1 MSMg01no502_b19.g1 CHROMAT_FILE:
MSMg01no502_b19.g1 PHD_FILE: MSMg01no502_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:04 2005
         (636 letters)



>mm_chr3_87186651_87187686
          Length = 1036

 Score = 1214 bits (628), Expect = 0.0
 Identities = 634/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgacacaagccttggactacaggacagaactccagactcctgctgtgtctgccttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgacacaagccttggactacaggacagaactccagactcctgctgtgtctgccttctt 260

                                                                       
Query: 61  tcttcttgctaggttggccccatcaggagagagggttgcaggtgcctagcccctcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcttgctaggttggccccatcaggagagagggttgcaggtgcctagcccctcccttt 320

                                                                       
Query: 121 gtctgctcagttccaaatgctgagaagttataaatccaatggggattacagatgtctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgctcagttccaaatgctgagaagttataaatccaatggggattacagatgtctact 380

                                                                       
Query: 181 gagagaagatgtagggtagttcatacacgagcagttgctaactgtaggtgtaactggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaagatgtagggtagttcatacacgagcagttgctaactgtaggtgtaactggtat 440

                                                                       
Query: 241 ctaatatgattctacaaaattgtaggaagggtctgaggttatacacactgaactaggact 300
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaaaggattctacaaaattgtaggaagggtctgaggttatacacactgaactaggact 500

                                                                       
Query: 301 ccccagagacccagaggactcagtattttcatctggcaaatgttttcattcctaacaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccagagacccagaggactcagtattttcatctggcaaatgttttcattcctaacaggg 560

                                                                       
Query: 361 aaactattaaagtctcccaaattgagaggttatcagggttaagcaaatgcccaaagagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactattaaagtctcccaaattgagaggttatcagggttaagcaaatgcccaaagagac 620

                                                                       
Query: 421 tgtggaactcatgggctgatgggactgtgaggaggctgagggaagcacctacatcgaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggaactcatgggctgatgggactgtgaggaggctgagggaagcacctacatcgaaag 680

                                                                       
Query: 481 agacacgaaaccccagagcacgcatctgtatgacttaagacatgtgctagactttcattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agacacgaaaccccagagcacgcatctgtatgacttaagacatgtgctagactttcattt 740

                                                                       
Query: 541 catcccacatactcttaagaggtttgtatagatgttctgagtcaaaggacctggagtgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catcccacatactcttaagaggtttgtatagatgttctgagtcaaaggacctggagtgtg 800

                                               
Query: 601 tgggtgatgggttcagggcatttccaggcaagtgtg 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgggtgatgggttcagggcatttccaggcaagtgtg 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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