Query= MSMg01no502_h22.b1 MSMg01no502_h22.b1 CHROMAT_FILE:
MSMg01no502_h22.b1 PHD_FILE: MSMg01no502_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:33 2005
(467 letters)
>mm_chr3_19243306_19244173
Length = 868
Score = 638 bits (330), Expect = 0.0
Identities = 417/462 (90%), Gaps = 28/462 (6%)
Strand = Plus / Minus
Query: 7 gaattcttcgtgcctcgaaagaacagaatcgctctttcttttctccttccttccttccgt 66
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 796 gaattcttcgtgccaagaaagaacagaatcgctctttcttttc----------------- 754
Query: 67 ctgtccttccttccttccttccttccttttttttttaattgatttttcaagacagggctt 126
| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 753 -------tacttccttccttcctt--ttttttttttaattgatttttcaagacagggttt 703
Query: 127 ctctgtgtagttctaggtgtcctggaacttgctctgtagaccaggctggccttgaactca 186
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 702 ctctgtgtagttctaggtgtcctggaacttgctctgtagaccaggctggcctggaactca 643
Query: 187 gagatctacctgccttggcctcagcagtgttgggattaaaggtgtgtaccaccactgccc 246
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 642 gagatccacctgccttggcctcagcagtgttgggattaaaggtgtgcgccaccactgccc 583
Query: 247 agctcagaattgctcttttgatggttatcttttagg-ttttttttctatgaattcacagc 305
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 582 agctcagaattgctcttttgatggttatcttttagggttttttttctatgaattcacagc 523
Query: 306 ctttttctacctctgtcaggtagaaaaattctacctgaaatgtttacaaatgtccaaagg 365
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 522 ctttttctacctttgtcaggtagaaaaattctacctgaaatgtttagaaatgtccaaagg 463
Query: 366 aaggtttttggcagggggaaggatcgtgagccctgaaggggataatagacactccacagg 425
||||||||||||||||||||||||| ||| |||||||| | |||| ||||||||||||||
Sbjct: 462 aaggtttttggcagggggaaggatcatgaaccctgaagagaataaaagacactccacagg 403
Query: 426 aagaccaacagagtcaactaacctggacccttggggctctca 467
||||||||||||||||| ||||||||||| |||| |||||||
Sbjct: 402 aagaccaacagagtcaattaacctggacc-ttggcgctctca 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_h22.g1 MSMg01no502_h22.g1 CHROMAT_FILE:
MSMg01no502_h22.g1 PHD_FILE: MSMg01no502_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:33 2005
(509 letters)
>mm_chr3_19111576_19112484
Length = 909
Score = 977 bits (505), Expect = 0.0
Identities = 508/509 (99%)
Strand = Plus / Plus
Query: 1 ctgccattcaggttatgttctagtataagtggccagaaagaactgtcagagataggttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccattcaggttatgttctagtataagtggccagaaagaactgtcagagataggttag 260
Query: 61 gtaaataatagtttcactggagtacagggatccatcagatcatagagaatttgtatactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaataatagtttcactggagtacagggatccatcagatcatagagaatttgtatactt 320
Query: 121 ggagaatgatcttaaaaattatatcaagatgagttggggggtcacatgaaggaacaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaatgatcttaaaaattatatcaagatgagttggggggtcacatgaaggaacaatga 380
Query: 181 gtattagagatgttttcattcatttgaaaacttacaaagaatatttactacgtagtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattagagatgttttcattcatttgaaaacttacaaagaatatttactacgtagtcagt 440
Query: 241 ctaagaaagttatgttcacattgctgttcatcaccaaaggaagtcaggacaggaactcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagaaagttatgttcacattgctgttcatcaccaaaggaagtcaggacaggaactcaa 500
Query: 301 gcagggcaggaacctggaggcaggagctgatgcagagtctatggagggtgctgcttaata 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gcagggcaggaacctggaggcaggagctgatgcagagtctagggagggtgctgcttaata 560
Query: 361 gcttattctgtgtggtttgctttcttatagaacctgggaccaccagcctaggaatagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttattctgtgtggtttgctttcttatagaacctgggaccaccagcctaggaatagcac 620
Query: 421 cacccacaataggcagggccctccctagtcaatctcaatcactaagaaaatgcccgttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacccacaataggcagggccctccctagtcaatctcaatcactaagaaaatgcccgttaa 680
Query: 481 gcctgtctgcttacagcttgatctgggat 509
|||||||||||||||||||||||||||||
Sbjct: 681 gcctgtctgcttacagcttgatctgggat 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
