BAC Information

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BAC

Clone NameMSMg01-502K05
Chromosome3 (Build37)
Map Location 96,184,705 - 96,185,109
singlet/doubletsinglet
Overlap genenone
Upstream gene4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K05.T7 (MSMg01no502_k05.b1)MSMg01-502K05.TJ (MSMg01no502_k05.g1)
ACCAG577945AG577946
length731956
length of high quality
(start - end)
409 (323 - 731)---
definitionCHROMAT_FILE: MSMg01no502_k05.b1 PHD_FILE: MSMg01no502_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:44 2005CHROMAT_FILE: MSMg01no502_k05.g1 PHD_FILE: MSMg01no502_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTAGATTACGTCCTGAAACTCCTTGAGATACAAACCTGGCCCAGA
TTGAGGGGTAAGAGGACTTGGGCCTTTTCACAGAGTAGCAGGTAGGAGAA
TATTTCCTCCTCAGTACTGGGAAATACAAAGGTGTCCTGTGGAGATACTG
AGGTACATTGCTGTGTGTCATTCAGTAAAATGAGATGGATGGACTTTCAT
GTTTTCTCAATGTGCCATCATAACTGTCATAACTATATTGGTGGCTCAGT
GGTAGAAGTCTCACCTTTTATGCAGAAGAACAGGGTTCCAGTCCCCACCA
GTGCAGTAGGGTGTAATGTTGTTTGTTTGATTTTGGTGCTAGCAAAATAT
CTAGGACCAAATCCATGGATGTGAATTGTTATTGAAGTATTGAAGTTATT
AATCACATATTGTTATTCAGATAGAAGAAAAGAACTTGTGTGGTGGGGTG
TGCCTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGTAGACCTCTGTGAA
TTTAAGGCTATCCTAGACTACATAATGAGTTCAAAGATAGCCAGAACTAC
ACTGTGATACCCTGTCGAGGGAGGGCAGAGAGAGAGAGAGAGAGAGAGAG
AAACGTCTCTCTGGACACTGCCCTCTCTGTGGCCTGTGATCGCACAGTGA
TTTCCGGCCTGCGTGGAGACCCAGCAGCCTC
ACCCATGAAAGGGGAACTCGGNNNNNTTCCCGAATCGNCACCCGCNNNGA
NNNNNNNNNNAATGCGCCACCCAGACNGGNNNNNNNNNNNNNNCCCCCCN
ACCCGGGCCGCGCGCCGTACCCCCCCCGCCCCCCCCCCCCCGGCCGCGCG
CGCGCGCCCGGCCCTCCTCGCCTGCGGCCCCGCGGCCGTCGAGGGTCCCC
CCCGACGCGCGCGGGCCCGCCCCGGCCGTGCGCGGCCCCGGCGCCGGCCT
CCGCCCGGCTCGCCGGCGCCCCCTCCTTTTTTGTCCCCACACGGAGCGCC
CCCACATGAAGCCCCCACCCCGGTACTCCCGCCGGCCCCCCGCGAGCAGC
CCCCCCCCTCCTTTCCTCATTCTACACCCCCAAGACCCGCAACGCAAACG
CCACGACGCATACCCTTTCCCCCCCACCCCCGCGCCGACAGGAACGGCCG
CGCCACCTACCGAACCCATACACCACCCTACCGCCACCCACCCAAAACAC
CACCAGACACCCGAACGCGAGCAAGCCCCGCCAACGCCCCCGCACCCGCC
TCCCACCGCCAGCGCCACCGACCAGCCTTACTAACACGCAACCACCCGGC
CAAACCACCGCTTATCCCCTACACACCGACACATCATGCCCGGCGCACAC
ACCTGATCCTCCCCCGACCTACCACATGGTAAACAAACCAGACCACCAAC
CACCGCCCCCTAGACCACCCCCGTCCCAGCTCGAATATTAGCCGCCCCCC
GCCGCGCCGAGCCAACGAAAGCACCCACCGCGGCGCCGCTACACGTGCCC
ACCCCGCTCTTTCTCCTGGCTTGATTCCGCCCCCCGACCTTATCACCACG
CCCCGAAGAATCACCCACCCCTGCCCCTCACACCCTTCCCGTTGCGCTAT
ATCCGCTCCGCTATCGCGCCCACTTGCTANACGCCCACCACACCCCACTC
GCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k05.b1 MSMg01no502_k05.b1 CHROMAT_FILE:
MSMg01no502_k05.b1 PHD_FILE: MSMg01no502_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:44 2005
         (409 letters)



>mm_chr3_96184505_96185313
          Length = 809

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/409 (98%), Gaps = 4/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagaacagggttccagtccccaccagtgcagtagggtgtaatgttgtttgtttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagaacagggttccagtccccaccagtgcagtagggtgtaatgttgtttgtttgatt 260

                                                                       
Query: 61  ttggtgctagcaaaatatctaggaccaaatccatggatgtgaattgttattgaagtattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtgctagcaaaatatctaggaccaaatccatggatgtgaattgttattgaagtattg 320

                                                                       
Query: 121 aagttattaatcacatattgttattcagatagaagaaaagaacttgtgtggtggggtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttattaatcacatattgttattcagatagaagaaaagaacttgtgtggtggggtgtg 380

                                                                       
Query: 181 cctttaatcccagcatttgggaggcagaggcaggtagacctctgtgaatttaaggctatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttaatcccagcatttgggaggcagaggcaggtagacctctgtgaatttaaggctatc 440

                                                                       
Query: 241 ctagactacataatgagttcaaagatagccagaactacactgtgataccctgtcgaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagactacataatgagttcaaagatagccagaactacactgtgataccctgtcgaggga 500

                                                                       
Query: 301 gggcagagagagagagagagagagagagaaacgtctctctggacactgccctctctgtgg 360
           |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 501 gggcagagagagagagagagagaga----aacgtctctctggacactgccctctctgtgg 556

                                                            
Query: 361 cctgtgatcgcacagtgatttccggcctgcgtggagacccagcagcctc 409
           |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 557 cctgtgatcgcacagtaatttccggcctgcgtggagacccagcagcctc 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)