Query= MSMg01no503_h03.b1 MSMg01no503_h03.b1 CHROMAT_FILE:
MSMg01no503_h03.b1 PHD_FILE: MSMg01no503_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:43 2005
(547 letters)
>mm_chr3_92760147_92761093
Length = 947
Score = 1000 bits (517), Expect = 0.0
Identities = 526/529 (99%)
Strand = Plus / Plus
Query: 19 gattgaatcctctggagattgattgcaaagagttgataatataaatgtgtatagtaggaa 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gattgaatcctctggagattgattgcaaagagttgataatataaatgtgtatagtaggaa 278
Query: 79 tcaaatctagggcttcagcagcagcaacaagtactgctaagtaatgagccaactctacag 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcaaatctagggcttcagcagcagcaacaagtactgctaagtaatgagccaactctacag 338
Query: 139 cactattggtcaaattatttagtagcttttttttttcattaaaactgtaggtaacaaata 198
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cactattggtcaaattatttggtagcttttttttttcattaaaactgtaggtaacaaata 398
Query: 199 ctcaaggatagtttgcaagatgatttaagtagatcagtctcacatattaaaagttataat 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctcaaggatagtttgcaagatgatttaagtagatcagtctcacatattaaaagttataat 458
Query: 259 gatttgttctcatcaaacaactgtcaacacagctcaacctccctcttcaccagaaatcct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gatttgttctcatcaaacaactgtcaacacagctcaacctccctcttcaccagaaatcct 518
Query: 319 atgaggagatgtctgagttccatgagatcttcatggggatttctatcatctcaacaaggt 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atgatgagatgtctgagttccatgagatcttcatggggatttctatcatctcaacaaggt 578
Query: 379 cttggatctactttgacattttttacctactcttctcctcattgaagttcaataatatag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttggatctactttgacattttttacctactcttctcctcattgaagttcaataatatag 638
Query: 439 tcactggcttcatccagacatgacaggatactgtggattacatataaggtgaagcaaggt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcactggcttcatccagacatgacaggatactgtggattacatataaggtgaagcaaggt 698
Query: 499 tcacatcaaatgcaatgcactaaagcttgatgacattacacatacgtag 547
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tcacatcaaaggcaatgcactaaagcttgatgacattacacatacgtag 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_h03.g1 MSMg01no503_h03.g1 CHROMAT_FILE:
MSMg01no503_h03.g1 PHD_FILE: MSMg01no503_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:43 2005
(476 letters)
>mm_chr3_92905333_92906206
Length = 874
Score = 779 bits (403), Expect = 0.0
Identities = 421/427 (98%), Gaps = 3/427 (0%)
Strand = Plus / Minus
Query: 48 tgggaaagagagtacagatctttctccaagccacaggttacagcttacttttgattagta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tgggaaagagagtacagatctttctccaagccacaggttacagcttacttttgattagta 815
Query: 108 ttttatgactttccagacaataggagagctttggctacctgccttttgctatttaaaaaa 167
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 814 ttttatgactctccagacaataggagagctttggctacctgccttttgctattt-taaaa 756
Query: 168 aatagtttaaacttttgtcatgctgaggattggacctgtgtactttgtacatgctaggct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aatagtttaaacttttgtcatgctgaggattggacctgtgtactttgtacatgctaggct 696
Query: 228 atacacactaagatatacccccatactcttactatatgtcttactttgaaacatattaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atacacactaagatatacccccatactcttactatatgtcttactttgaaacatattaaa 636
Query: 288 aatcaccataatttgtattgttttaaacatctaataatcacattttacacacttgtcttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aatcaccataatttgtattgttttaaacatctaataatcacattttacacacttgtcttt 576
Query: 348 tttaactaactttttctgtgtcttataatttcatgcttctatccaggatcatttttttct 407
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttaactaac-ttttctgtgtcttataatttcatgcttctatccaggatcatttttttct 517
Query: 408 ttagcttaactaatgaccccaaatatttcagaaaagttctttcattatttacatattttt 467
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 516 ttagcttaactaatgaccccaaacatttcagaaaagttctttcattatttacata-tttt 458
Query: 468 tttcttg 474
|||||||
Sbjct: 457 tttcttg 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 874
Length adjustment: 10
Effective length of query: 466
Effective length of database: 864
Effective search space: 402624
Effective search space used: 402624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
