Query= MSMg01no504_a17.b1 MSMg01no504_a17.b1 CHROMAT_FILE:
MSMg01no504_a17.b1 PHD_FILE: MSMg01no504_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:31 2005
(377 letters)
>mm_chr3_104346189_104346965
Length = 777
Score = 578 bits (299), Expect = e-169
Identities = 341/371 (91%), Gaps = 26/371 (7%)
Strand = Plus / Plus
Query: 5 gaattccttctgtttactgctgagagataaaagacagaaaagtattatggcctacatatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctgtttactgctgagagataaaagacagaaaagtattatggcctacatatt 264
Query: 65 tccccccatgtgatactgttaagagggagtacctcccaaaaagggtaagccaggccagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacccccatgtgatactgttaagagggagtacctcccaaaaagggtaagccaggccagca 324
Query: 125 ccaatgcctccagcccagaactagaatgccaggccagcaaggagtcctcagctagacata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaatgcctccagcccagaactagaatgccaggccagcaaggagtcctcagctagacata 384
Query: 185 ttctcaaagtggtggtggtgtctctctctctctctctctctctctctctctctgtgtgtg 244
||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 385 ttctcaaagtggtggtggtgtgtctctctctct--------------------gtgtgtg 424
Query: 245 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaaggagagaaggacaaagagagtg 304
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 425 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------aaggagagaaggacaaagagagtg 478
Query: 305 agccttttttttggttgtttggttggttgtttggttggttggttggttagctgttttttt 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 479 agccttttttttggttgtttggttggttgtttgtttggttggttggttagctgttttttt 538
Query: 365 tttttttggtg 375
|||||||||||
Sbjct: 539 tttttttggtg 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_a17.g1 MSMg01no504_a17.g1 CHROMAT_FILE:
MSMg01no504_a17.g1 PHD_FILE: MSMg01no504_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:31 2005
(542 letters)
>mm_chr3_104496702_104497643
Length = 942
Score = 957 bits (495), Expect = 0.0
Identities = 507/513 (98%), Gaps = 4/513 (0%)
Strand = Plus / Minus
Query: 30 ttatttttatctatgtgtatgcctgtaaagttatatgtacaccacatacatgcagatgcc 89
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ttatttt----tatgtgtatgcctgtaaagttatatgtacaccacatacatgcagatgcc 887
Query: 90 tgcggaggctagaagatggcattagatctcctaagattggagttacaagtggttttaagt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgcggaggctagaagatggcattagatctcctaagattggagttacaagtggttttaagt 827
Query: 150 cgtcctgtgggggtggaggaaaccaaacatagctcctcggcaaaaacatcaagtgctgtt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cgtcctgtgggggtggaggaaaccaaacatagctcctcggcaaaaacatcaagtgctgtt 767
Query: 210 agccactgaggcatatctagcccctttccatcgtattgtacagtactcgcccttctcatg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agccactgaggcatatctagcccctttccatcgtattgtacagtactcgcccttctcatg 707
Query: 270 atgactctctcacagttaaggtcaccattggccatatgttgatgggcgtgcagagtcatg 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 atgactctctcacagttaaggtcaccattggccatatgttgatgggcgtgcagagtcata 647
Query: 330 gataagggcagtgctaaggtttgaggaaggctcctgaaaagcttcacaggttcaactcct 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gataagggcagtgctaaggtttgaggaaggctcctgaaaagcttcacaggttcaactcct 587
Query: 390 ggtcttgagggtggtgatgctgagcactgcaggatgctggggactggaggaggcttgggt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggtcttgagggtggtgatgctgagcactgcaggatgctggggactggaggaggcttgggt 527
Query: 450 catagggggcgtgcccttgaaggaagcctttctctttttctgcttcttggctttgtgatg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 catagggggcgtgcccttgaaggaagcctttctctttttctgcttcttggctttgtgatg 467
Query: 510 tgactggctttgtgcccacttccaccatgccct 542
||||||||||||||||||| |||||||||||||
Sbjct: 466 tgactggctttgtgcccacctccaccatgccct 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
