Query= MSMg01no504_e13.b1 MSMg01no504_e13.b1 CHROMAT_FILE:
MSMg01no504_e13.b1 PHD_FILE: MSMg01no504_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:51 2005
(638 letters)
>mm_chr3_127167002_127168036
Length = 1035
Score = 1044 bits (540), Expect = 0.0
Identities = 614/640 (95%), Gaps = 7/640 (1%)
Strand = Plus / Plus
Query: 1 aagctaggcttgggctggtccccatcccctagggaatgtgaagaccgtcgctgttggggc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctaggcttgggctggtccccgtcccctagggaatgtgaagaccgtcgctgttggggc 260
Query: 61 tctcaggccattgttagctggcctccactcctgaaacatcaacacaaactgcaattgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaggccattgttagctggcctccactcctgaaacatcaacacaaactgcaattgtct 320
Query: 121 tagcaattttgcaaatgtatgcctatagcactagccctcatgactgcttaaaattgaaca 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaa-tttgcaaatgtatgcctatagcactagccctcatgactgcttaaaattgaaca 379
Query: 181 tctgtgtttatttcccaatttgtagaaaataacag--agaaaatgtcgttttcccaataa 238
||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||
Sbjct: 380 tctgtgtttatttcccaatttatagaaaataacagaaaaaaaatgtcattttcccaataa 439
Query: 239 ttaagtcaaagaatctattttttgaagcttcccattgttgttgtggttacatataactaa 298
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 440 ttaagtcaaagaatc-attttttgaagcttcccattgtttttgtggttacgtataactaa 498
Query: 299 aatttaaactagcacattctaactattttggttataattaaatagtgaaagtctcacccc 358
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 aatttaaactagcactttctaactattttggttataattaaatagtgaaaatctcacccc 558
Query: 359 ggattaatgtttgaggtcccttttataaaccttcaagtgatgtgaaatattacttaacat 418
|||||||||||| |||||||| || |||||||| |||||||||||||||||||||| ||
Sbjct: 559 ggattaatgttt--ggtcccttctacaaaccttcgagtgatgtgaaatattacttaaaat 616
Query: 419 taacattaaattaatattacttaacattaacactgtgtacaaggagtgtaccatatgcca 478
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 617 taacattaaattaatattacttaacattaccattgtgtgcaaggagtgtaccatatgcca 676
Query: 479 tctgtgttgcctcaatacagtacacaacaaggtctggagaacatcagaaaggtgttttct 538
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct: 677 tctgtgttgcctcaatacaatacacaacaaagtttggagaacatcagaaaggtgttttct 736
Query: 539 agtcccatggtattctgcaccccaccaaccaaacaccaacttatttggaaaacttctgtc 598
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 737 agtcccatggtattctgcaccccaccaaccaaacaccaacttatttggaga-cttctgtc 795
Query: 599 ctttgcgtcataggtgatggctttaaaaggcaatcttctc 638
||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctttgcgtcataggtgatggctttaaaaggcaatcttctc 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1035
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1025
Effective search space: 643700
Effective search space used: 643700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_e13.g1 MSMg01no504_e13.g1 CHROMAT_FILE:
MSMg01no504_e13.g1 PHD_FILE: MSMg01no504_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:51 2005
(554 letters)
>mm_chr3_127338610_127339563
Length = 954
Score = 1023 bits (529), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Minus
Query: 1 actgtgtagtacaggctagcatagagattcacctgcctctgcctcccaagtgctggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 actgtgtagtacaggctagcatagagattcacctgcctctgcctcccaagtgctggatta 478
Query: 61 aaggcgtgcatcactacagcctactcaacctcctgctattaaaataaagctttttctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaggcgtgcatcactacagcctactcaacctcctgctattaaaataaagctttttctgaa 418
Query: 121 cactggagcctgttgtgacataattattatttaagatccccacttttgctcttcgttgcc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cactggagtctgttgtgacataattattatttaagatccccacttttgctcttcgttgcc 358
Query: 181 caggcagcatgtatttattgatttaaacatccagagttctgccactgaacttgtccccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 caggcagcatgtatttattgatttaaacatccagagttctgccactgaacttgtccccag 298
Query: 241 ctcattatgttgttaatttatttatttagatacaaggtctcactgtgtaaccctggctgg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctcagtatgttgttaatttatttatttagatacaaggtctcactgtgtaaccctggctgg 238
Query: 301 cctggaattcactctgtagactaagcctgaactcatggaaatctgcctgcctttaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cctggaattcactctgtagactaagcctgaactcatggaaatctgcctgcctttaagaag 178
Query: 361 tgatttcttaaaaacagaatgtgggtttgtgatggatttcatactccaatttcagggttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgatttcttaaaaacagaatgtgggtttgtgatggatttcatactccaatttcagggttg 118
Query: 421 gtgtttcaagtaggatcccatattttgtaatttcttagtgaaattccacatcaaacatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gtgtttcaagtaggatcccatattttgtaatttcttagtgaaattccacatcaaacatga 58
Query: 481 cccaagatacaaatatactcaattcaatatgtgaaaactttagtaaaatacaactca 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 cccaagatacaaatatactcaattcaatatgtgaaaactttagtaaaatacaactca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
