CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGGCTTTCTGCATTCAAACTGTGATATTAACACACCAACCAAG
CATACCCTGTTGTGCCATAAAGCCCTGGTACTGCAGTGTCAAAGGGGGAG
AAAACAAACATTATTCTAAAACAGAACCTGGAGAATGGTACTGTGAAGCT
TTAAAAGAAGATATGACTCTCATGAATAAGCAAATTTATTTACTACCCAA
AAGCAACATTTCTATTTTTATGTCTGAGAATGTTGGAATTCTATTTCCAG
AGAAACAGTCTATAAATTGTATGTTTCAAAAAATGAAGCAACAAGATAAA
GTAATAGATTAGTCAACATTAGATATTAAAAGGGCTCGGAGAAAGTTCTG
AGAGTACTGAACAATATGGTAGGCATAAAACAATAACAAAATCCAATTTT
CTTTTCCTTAGTGCCTCTTGGTAAGGCTGGTTGATTAGTTCAAGATTTCT
TGAAGTCAGTGCCTGTTGGTTCCCAGGGTAGTTCAGTAATTCTTAAAGTA
TATAGGATGCAGAAGGGATGTGATTGTGGTATCAGGGTGTCAGATGCAGA
GAGGTTTTCCAGTAGGTTTAGTTAAGCTTCAAGTGCATTTCTGCAAAGCA
ACATTAAAGGAATAAAATACTCAGAACCTCAGAAATGTGTTTTCAGATCT
AATGGAAAGCTGAACACTATCGTGCAAGGTTGTAATGAGAATTCATGTCC
AGGGACATGAAGGATTATTTCAGTATAAAGTTTTCCATATTT

NNAAACACCGGNNNNNNNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGG
CCAGTCTGAGACTTCTGACTGTCTCACAAAGAAATAAATAAGAGAGAAAG
ATAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGACAGACAGAAAGACAGAAAGACATCTGTGTAGACAGATAATGGC
TGGCTGGCTGGATAAAGATAGATTCTTTAATCCTGTTGGTCCCCCCCCCC
AAAAAACACCTACCCAAAAAATAAAAGCAGTCATGGACACCCCTGTGTAT
CCGTACTCAAAGGGAATTAATTAATAAACTAAGGTCCCCATCCAATGAAG
GCCTTGAGAACCCCCTTCCCTGGGTGTGAGGACCCCCGGAAAAACCTTTC
CAAAAGAACCAACACCTTGGGCCTTCACCTAAACAACCCTTGGCGCCTTG
GGTCCCCCCCCCCCCCCGCGGGCCGTGAAAGTCCCCCGGAAAAATACTTT
TTTATTCTAAAAGAAAAGCATTTTTTTTTTATATTGGTAAACTAGAAAAA
TAATTTGCAACTCCCTGGCTGCTGTGGTCTTCAGCATGTTTTCCAGTGAC
TTGAATTTTAGTATGCAAAGATTTAAAAGTTTCCTATGAATGTTCAAAAA
GNATTATTGTATTTTGATGTTTTTCCTTAAACACTATATCCCCCCAAAAT
ATATAATATTAATATAATNNATATAATATATAATATTATAATGGCG

Query= MSMg01no504_e18.b1 MSMg01no504_e18.b1 CHROMAT_FILE:
MSMg01no504_e18.b1 PHD_FILE: MSMg01no504_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:52 2005
         (581 letters)



>mm_chr3_118047326_118048306
          Length = 981

 Score = 1085 bits (561), Expect = 0.0
 Identities = 573/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggctttctgcattcaaactgtgatattaacacaccaaccaagcataccctgt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattcatggcttactgcattcaaactgtgatattaacacaccaaccaagcataccctgt 722

                                                                       
Query: 65  tgtgccataaagccctggtactgcagtgtcaaagggggagaaaacaaacattattctaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgtgccataaagccctggtactgcagtgtcaaagggggagaaaacaaacattattctaaa 662

                                                                       
Query: 125 acagaacctggagaatggtactgtgaagctttaaaagaagatatgactctcatgaataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acagaacctggagaatggtactgtgaagctttaaaagaagatatgactctcatgaataag 602

                                                                       
Query: 185 caaatttatttactacccaaaagcaacatttctatttttatgtctgagaatgttggaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaatttatttactacccaaaagcaacatttctatttttatgtctgagaatgttggaatt 542

                                                                       
Query: 245 ctatttccagagaaacagtctataaattgtatgtttcaaaaaatgaagcaacaagataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctatttccagagaaacagtctataaattgtatgtttcaaaaaatgaagcaacaagataaa 482

                                                                       
Query: 305 gtaatagattagtcaacattagatattaaaagggctcggagaaagttctgagagtactga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtaatagattagtcaacattagatattaaaagggctcggagaaagttctgagagtactga 422

                                                                       
Query: 365 acaatatggtaggcataaaacaataacaaaatccaattttcttttccttagtgcctcttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaatatggtaggcataaaacaataacaaaatccaattttcttttccttagtgcctcttg 362

                                                                       
Query: 425 gtaaggctggttgattagttcaagatttcttgaagtcagtgcctgttggttcccagggta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaaggctggttgattagttcaagatttcttgaagtcagtgcctgttggttcccagggta 302

                                                                       
Query: 485 gttcagtaattcttaaagtatataggatgcagaagggatgtgattgtggtatcagggtgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttcagtaattcttaaagtatataggatgcagaagggatgtgattgtggtatcagggtgt 242

                                                
Query: 545 cagatgcagagaggttttccagtaggtttagttaagc 581
           ||| ||||| |||||||||| ||||||||||||||||
Sbjct: 241 caggtgcagggaggttttccggtaggtttagttaagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)