Query= MSMg01no504_g14.b1 MSMg01no504_g14.b1 CHROMAT_FILE:
MSMg01no504_g14.b1 PHD_FILE: MSMg01no504_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:00 2005
(602 letters)
>mm_chr3_25794642_25795646
Length = 1005
Score = 1031 bits (533), Expect = 0.0
Identities = 586/609 (96%), Gaps = 11/609 (1%)
Strand = Plus / Plus
Query: 5 gaattctagtgctacatatgaaagataaaaatgaatagtgtgataattttaaatttctgt 64
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagggcaagatatgaaagataaaaatgaatagtgtgataattttaaatttctgt 264
Query: 65 ttctgagaacgagtcctccaagatcctctcctcattagtgcagaagggcatccagagctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctgagaacgagtcctccaagatcctctcctcattagtgcagaagggcatccagagctc 324
Query: 125 catataaataagatcaggtcagacacagaccagcatccagcgaatttggccaggaactcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catataaataagatcaggtcagacacagaccagcatccagcgaatttggccaggaactcc 384
Query: 185 ttgggctttctagaacagggtataaacatcaattatttttcaataatgcaaaaccttatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgggctttctagaacagggtataaacatcaattatttttcaataatgcaaaaccttatg 444
Query: 245 tgtcagacaaataaacaggaagctcctacgaacccacttagcttatgtgtccactctaaa 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 445 tgtcagacaaataaacaggaagctcctacaaacccacttagcttatgtgtccattctaaa 504
Query: 305 atatgtgaatgaaataaatattcactttctcactattttcataaaaagatgtgttggggc 364
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 505 atatgtgaatgaaataaatattcactttctcactatttccataaaaagaagtgttggggc 564
Query: 365 tgggttgttaaaagggagggtgaatctctgctcttgtatgtctatggtcctgggttaaat 424
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggttgttaaaagggagggtgaagctctgctcttgtatgtctatggtcctgggttaaat 624
Query: 425 cctaaaatttcaaatggtaatgaggattggcaagatgtatccaagggtaaggaaaaatgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctaaaatttcaaatggtaatgaggattggcaagatgtatccaagggtaaggaaaaatgc 684
Query: 485 -acaaagcctaacacttgaatttcttctctgga--ccacactgcagaaccaattccatta 541
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 tacaaagcctaacacttgaatttcttctctggagaccacactgcagaaccaattccatta 744
Query: 542 agttgtcctttagcgcgcgcacacacacacacacacacacacactca--------aaata 593
|||||||||||||| | | ||||||||||||||||||||||||| || |||||
Sbjct: 745 agttgtcctttagcacacacacacacacacacacacacacacacacacacacacgaaata 804
Query: 594 agaatacac 602
|||||||||
Sbjct: 805 agaatacac 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1005
Length adjustment: 10
Effective length of query: 592
Effective length of database: 995
Effective search space: 589040
Effective search space used: 589040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_g14.g1 MSMg01no504_g14.g1 CHROMAT_FILE:
MSMg01no504_g14.g1 PHD_FILE: MSMg01no504_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:00 2005
(562 letters)
>mm_chr3_25848972_25849933
Length = 962
Score = 884 bits (457), Expect = 0.0
Identities = 493/505 (97%)
Strand = Plus / Minus
Query: 58 gagatggctcagtagttaagagtgcttgatgttcttgtagaagaccaacattcaatttaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gagatggctcagtagttaagagtgcttgatgttcttgtagaagaccaacattcaatttaa 903
Query: 118 agtacctgtatcaggtagttcaaaccacccgtaatcccagaaagtcccaggaagatccag 177
|| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct: 902 agaacctgtatcaggtagttcaaaccacccataattccagagagtcccaggaagatccag 843
Query: 178 actcctttctggcttctgcaggtctctgtactcatatatgcatatgtacatagagatata 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 actcctttctggcctctgcaggtctctgtactcatatatgcatatgtacatagagatata 783
Query: 238 cacatccttatacataatgctttagtcttaaaaataaccagtattaacatgatatttctt 297
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 cacatccccatacataacgttttagtcttaaaaataaccagtattaacatgatatttctt 723
Query: 298 aattgatatagttatactcctattttatttgttattatattaaatggcagaattgttgag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aattgatatagttatactcctattttatttgttattatattaaatggcagaattgttgag 663
Query: 358 ttgaattatgaaatatttctgggacgtgtggggaaataaatcactatataattttattat 417
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 662 ttgaattatgaaatatttctgggatgtgtggggaaataaatcactacataattttattat 603
Query: 418 caacgatgaatatacacccttagatccaagtgttttatattttctacaatgtaattagct 477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caaagatgaatatacacccttagatccaagtgttttatattttctacaatgtaattagct 543
Query: 478 tgcagactgattaacttaattcaatgaaaaaatgccataaccctttgtgatggatatact 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgcagactgattaacttaattcaatgaaaaaatgccataaccctttgtgatggatatact 483
Query: 538 gatcattactattgatcataaagag 562
|||||||||||||||||||||||||
Sbjct: 482 gatcattactattgatcataaagag 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
