BAC Information

Click to search

BAC

Clone NameMSMg01-504G24
Chromosome3 (Build37)
Map Location 71,770,278 - 71,770,431
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459, 2010204N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504G24.T7 (MSMg01no504_g24.b1)MSMg01-504G24.TJ (MSMg01no504_g24.g1)
ACCAG579317AG579318
length778797
length of high quality
(start - end)
574 (50 - 623)154 (80 - 233)
definitionCHROMAT_FILE: MSMg01no504_g24.b1 PHD_FILE: MSMg01no504_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:02 2005CHROMAT_FILE: MSMg01no504_g24.g1 PHD_FILE: MSMg01no504_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGGTTTACTTCTATACCCCGTTTTTTGACTAGATTGTTTG
GATTGGTGATTAACTTTTTCTTTATATATTTTGGACATTAGCCCTCTATC
AGATGTGGGGTTAGTGAAGATTTTTTTCCAATAAGTAGGTTGCTGATTTG
TCTTATCAACTATGTCCTTTGCCTTACAGAAGCTTTCCACTGTCATGAAG
TCCTATTTATCAATTCTTGATCTTAGAGCATGAGCCATTGGAGTTCTGTT
TAGGAAATTTCCTCCTGTGCCAATGAGTTCAAGGCTCTTTTCCACTTTGT
CTTCTATTAGAATCAGTGTATCTGGTTTTATGTTGAGGTCCTAGATACAC
TTAGACTTGAGCTTTGTACAAGGTTACAAATATGGGTCAATTTTCATTCT
TCTACATACAGACAGCCAGTTAGACCAGCTCCATTTATTGAAGATGCTTT
CTTTTTTTTTTCCATTGTATGTTTTTTGGCCTCTTAGTCCAGGATCAAGT
GACCATATGTGTGTGGTTTGACTTCTGGGTCTTCAGTTCTATTCCATTGA
TTAACATATCTGTCTCTATACCAATACCATGCAGTTTTTATCAATATTGC
TCTGTAGTAAAGCTTGATGCCAGGGATGGTGATTCCCCTGGCTGTTCTTT
TATTGTTTTCGCTATTTTGGAACTTTTGCCTTTTCTGATGAATTTAAAAT
TGCTCTGTCATGTCTTTGAGGAATGTGT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCATTCACCTTGATATCA
ACTGCTAGATAAGTTCACATATCTCATTAAAGTATGTTGTGGCTTGCATG
CTCATTTTTATACAGATATTTGCATCTAAATAGTTACTGCATATTAGTAG
CTTTAATTTCTGTCCAATTGGATTATGTGAATATGGTTAAGGGGNNNNAA
AAANNNAAAAAAAAGAAGATATTTGTGGGGTGAGTGGTTGTGTGAAATTA
TGCGTAGAGATTTGTAATTATTATCTCCAAGTATATGTACTAGNTTTGCT
TTCTCTTTCTTGTTATCTTGTCTGACTTATTACTNATCCGNAGATGCTGG
ATNTGATGTTTTGTAGCGTCCTATACTTTTGTATGCAGCTATTTTTTTTT
TGTTTGTGCCCTCTTTGTTCCTTCTCTTGCTATTGCACTTTGCACGCTTG
TTGNTTTTAGTCTTGTTTGTTTCGCCGCCAGAGTNACGGTATACCTTAAC
CATAGCACCATTTATTGAATGTTNTATTTAATTCTCTTTTCTTTGTTTTC
CCTTTCCCACCATACTATTTTTAATTCCTTTTTTATTCTCCTTGAAACAC
CAAGTCTTTTTCGCCTTCTTCTCTTTTTTTTTCTTTCCGCCCTCCTTCTT
CTTTTTTTCCCTTTGTTTCTTTCTTCTTTCTTCGCTCGTTTCGTTGCTCC
TATTTTATTTACATACTCCTCCTTCTCTCTCTTTTTACTTCTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_g24.g1 MSMg01no504_g24.g1 CHROMAT_FILE:
MSMg01no504_g24.g1 PHD_FILE: MSMg01no504_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:03 2005
         (154 letters)



>mm_chr3_71770078_71770631
          Length = 554

 Score =  298 bits (154), Expect = 1e-85
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcattcaccttgatatcaactgctagataagttcacatatctcattaaagtatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcagcattcaccttgatatcaactgctagataagttcacatatctcattaaagtatgttg 295

                                                                       
Query: 61  tggcttgcatgctcatttttatacagatatttgcatctaaatagttactgcatattagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tggcttgcatgctcatttttatacagatatttgcatctaaatagttactgcatattagta 235

                                             
Query: 121 gctttaatttctgtccaattggattatgtgaata 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gctttaatttctgtccaattggattatgtgaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)