Query= MSMg01no504_h17.b1 MSMg01no504_h17.b1 CHROMAT_FILE:
MSMg01no504_h17.b1 PHD_FILE: MSMg01no504_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:06 2005
(620 letters)
>mm_chr3_30808435_30809453
Length = 1019
Score = 1108 bits (573), Expect = 0.0
Identities = 606/617 (98%), Gaps = 3/617 (0%)
Strand = Plus / Plus
Query: 5 gaattctccagt-tcccacaatcacttctcccactttgaaatccaaatcaaaaaaattta 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagtgt-ccacaatcacttctcccactttgaaatccaaatcaaaaaaattta 263
Query: 64 tgtacaaattttatgtagaaattgcagaaaagacgccatgtgccactcaatacgtcagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtacaaattttatgtagaaattgcagaaaagacgccatgtgccactcaatacgtcagag 323
Query: 124 gaatcacatccccaaagacagcacacagctgtcctttaaaggataattcctccttggcat 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 gaatcacatccccaaagacagcacacagctgtcctttaaaggacaattcctccttggcat 383
Query: 184 tcctacagatccacagatcaacacaaaagagtctttccaaaagggcagcacactgaaggg 243
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctacagatccacagagcaatacagaagagtctttccaaaagggcagcacactgaaggg 443
Query: 244 tgctaaagacgacgacctgcaactgttgaaagtagaagtgttcttgtggaaaagggttaa 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 tgctaaagacgacgacctgcaactgttgaaagcagaagtgttcttgtggaaaagggttaa 503
Query: 304 tgcacacaaggttgtgttccttttcactctggtaacagctctgagatgcgagtttgctac 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcactcaaggttgtgttccttttcactctggtaacagctctgagatgcgagtttgctac 563
Query: 364 ccggaagctttaacatagttcccaaaggggtgttaacatgatacaccaaaataacagaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccggaagctttaacatagttcccaaaggggtgttaacatgatacaccaaaataacagaag 623
Query: 424 cccagtggtaaacacgggcgccctgattagaaagcacatcctatctggaagaaacatgta 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccagtggtaaacacgggcgcccggattagaaagcacatcctatctggaagaaacatgta 683
Query: 484 agagatcagaaaatgggtaagctgagaaaagcttgcaaagagactactcaggaaaaagaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagatcagaaaatgggtaagctgagaaaagcttgcaaagagactactcaggaaaaagaa 743
Query: 544 ataaccctgaaggttctcagaaagttatttataaatgccatagaggcagaaagagaggta 603
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 744 ata-ccctgaaggttctcagaaagttatttatagatgccatagaggcagaaagagaggta 802
Query: 604 aacacatttttctggtg 620
|||||||||||||||||
Sbjct: 803 aacacatttttctggtg 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_h17.g1 MSMg01no504_h17.g1 CHROMAT_FILE:
MSMg01no504_h17.g1 PHD_FILE: MSMg01no504_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:06 2005
(489 letters)
>mm_chr3_30972535_30973423
Length = 889
Score = 745 bits (385), Expect = 0.0
Identities = 435/471 (92%), Gaps = 33/471 (7%)
Strand = Plus / Minus
Query: 44 caaaggcaggcagatctctgagtttgaagacagcctggtctacataacaagttccaggag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 caaaggcaggcagatctctgagtttgaagacagcctggtctacataacaagttccaggag 830
Query: 104 agccaaggatacacagagaaaccctgttaaaaatataat------------------taa 145
||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 829 agccaaggatacacagagaaaccctgttaaaaatataattaataataataataataataa 770
Query: 146 taataataataataataataaataaccctctgttgatttttaactgcagattcagtagcc 205
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 769 taataataataataataataaataaccccctgttgatttttaactgcagattcagtagcc 710
Query: 206 actgatgaacataacctggatccagccaatatttcccca---ttttttttt----acatc 258
||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 709 actgatgaacataacctggatccagccaatatttccccaggg--------tggcaacatc 658
Query: 259 atctgtccctcttcattgattagctcatctgtccctcttcattaattcattgattagcta 318
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 657 atctgtccctcttcattgattagctcatctgtccctcttcattgattcattgattagcta 598
Query: 319 gaatttactttttccatgtatgcttctctatcatctattggttaccataaaatttaatta 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaatttactttttccatgtatgcttctctatcatctattggttaccataaaatttaatta 538
Query: 379 gtcttcctattccaggaaaggaagaaagtttcactatttcttttttgttactgggcttcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 537 gtcttcctattccaggaaaggaagaaagtttcactatttcttttttgttactgggtttcc 478
Query: 439 aaagtctccaaagatgaccaaagcatttttatttatttatttattttattg 489
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaagtctccaaagatgaccaaagcatttttatttatttatttattttattg 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
