Query= MSMg01no504_n18.b1 MSMg01no504_n18.b1 CHROMAT_FILE:
MSMg01no504_n18.b1 PHD_FILE: MSMg01no504_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:36 2005
(713 letters)
>mm_chr3_57270384_57271494
Length = 1111
Score = 1210 bits (626), Expect = 0.0
Identities = 689/710 (97%), Gaps = 4/710 (0%)
Strand = Plus / Minus
Query: 5 gaattcacatccttttatttggtgctactgtttctgttactggccacgtagcactgtgca 64
|||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct: 911 gaattcacatccaagtatttggtgctgctgtttctgttactggccacttagcaccgtgca 852
Query: 65 tcttatgttagggacagcggaggaggattcaggtgaactgttaactaggcagcgagtgta 124
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 851 tcttatgttagggacagtggaggaggattcaggtgaactgttaactaggcagcgtgtgta 792
Query: 125 ctaatttgtggttgaaggtgtgatttttttttcttttatttctcattttgttattaccag 184
||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct: 791 ctaatttgtggttgaaggtgtga-tttttttccttttatttctcattttgttatcaccag 733
Query: 185 cata-tttttaaactgtttctatttgaataaatactatttcttatttacttactcagaat 243
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 catattttttaaa-tgtttctatttgaataaatactatttcttatttacttactcagaat 674
Query: 244 gtatcttatgggtatctactactacatacttaacatggttacaggtagtgggtgtgtagg 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtattttatgggtatctactactacatacttaacatggttacaggtagtgggtgtgtagg 614
Query: 304 catgaacatggtgaataagatcccttccttcatgggccattcattggggaggacaagata 363
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 613 catgaacatggtgaataagatcccttccttcatgggtcattcattggggaggac-agata 555
Query: 364 aaaccgaagttgctgtgaagaaaataggtgcaggttaaaagacagacattcatgggtggt 423
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 aaacccaagttgctgtgaagaaaataggtgcaggttaaaagacagacagtcatgggtggt 495
Query: 424 gggaggtgaccttttagataggggcagggaggagtgtcttgatacctggcatttgtaggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggaggtgaccttttagataggggcagggaggagtgtcttgatacctggcatttgtaggt 435
Query: 484 tagtaactaagggaaatgggctttggtgggacgtgtgttccagacagagggaataattgt 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 434 tagtaactaagggaaatgggcttcggtgggacgtgtgttccagacagagggaataattgt 375
Query: 544 atggattcaggagctggaagcaatgttaaagccagacactaagattgggagactgtatca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atggattcaggagctggaagcaatgttaaagccagacactaagattgggagactgtatca 315
Query: 604 gagccaggctgggatggtagtttggccactgggctacaggcaagatgtgactccactatc 663
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagccaggctgggatggttttttggccactgggctacaggcaagatgtgactccactatc 255
Query: 664 catcctggtagggtaggaagcagaggtcttccttatatttagctgttctt 713
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 catcctggtagggtaggaagcagaggtcttccttatatttagctgttctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1111
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1101
Effective search space: 774003
Effective search space used: 774003
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no504_n18.g1 MSMg01no504_n18.g1 CHROMAT_FILE:
MSMg01no504_n18.g1 PHD_FILE: MSMg01no504_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:37 2005
(531 letters)
>mm_chr3_57262289_57263219
Length = 931
Score = 1019 bits (527), Expect = 0.0
Identities = 530/531 (99%)
Strand = Plus / Plus
Query: 1 actgcctgaggtcagctttgtatggcttagaatcagttgatatatgaatttaagctaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcctgaggtcagctttgtatggcttagaatcagttgatatatgaatttaagctaact 260
Query: 61 gtaataaaacccagccatagggctgcagacattctctaaagtcattctgcacaacccatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaataaaacccagccatagggctgcagacattctctaaagtcattctgcacaacccatc 320
Query: 121 ctgctttatctgccacagaaatgcaggcttgcagaaaatgaaaagagagtatttatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctttatctgccacagaaatgcaggcttgcagaaaatgaaaagagagtatttatttct 380
Query: 181 gtgtaacgcaagttcctgcgaatcaacaccaggcaatgattaagtggccacacggacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtaacgcaagttcctgcgaatcaacaccaggcaatgattaagtggccacacggacaag 440
Query: 241 gagtgtgagtacaaaggcagaacgtggtgcagctgcaggcccgctctgcctcatcacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgtgagtacaaaggcagaacgtggtgcagctgcaggcccgctctgcctcatcacttg 500
Query: 301 gtccgcaaggcccaagacgcgcgtcagctcacagctgcatcacgttacaacagtagtgat 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccgcaaggcccaagactcgcgtcagctcacagctgcatcacgttacaacagtagtgat 560
Query: 361 tacagccaggttagaaagggctcgcttttgttcagagcagactctacatcattgaagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacagccaggttagaaagggctcgcttttgttcagagcagactctacatcattgaagaga 620
Query: 421 gggatcagatcttcagactccaaagtcccgaggtcaacatttgttcctggaaggcagtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggatcagatcttcagactccaaagtcccgaggtcaacatttgttcctggaaggcagtcc 680
Query: 481 aggaaatcagggaagcgggtctgctggggattgacggtcatgggtgtctga 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaatcagggaagcgggtctgctggggattgacggtcatgggtgtctga 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
