NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTGTGTGTGTCCTTGCGGGTGTCCAGAGACTCCTCTGGCAA
GGCACCCTGGTCCTCGAGTGGACTGGAAGGGACTTGTGCCCCAGGTCAGG
CCGGGTTGTCTGCTTCCCTAGTTAATGCAGTCTCAGGTTCCACACGATTG
GATTGGAGCAGACGCTGTGTTCCACTCATCAGAGGTCCTAGGATCCCATG
GGGAATCCTGTGTGGCTCCTGGCAGGTGTGCAGAGACTCTGCTGGCAAGG
CACCCCCCCATGCTCTGGTGGACTGTAATGGACCACAAAGGATTTAAATT
GACTGCTGAATTTTTAGATATATTTTCTTCTCTGTAGTCAATGGTTTGGG
TAAAGAAGATTCTAAATCTCTTTAAGTTTATGTTCTAAGTAAGGTTTATA
AACTCAAATGCTCAAGGCTGTAGATTTAGTTTGGCCAATATAGTAAAGAG
TTTATACCAATTAAATAAGATGCTATTATTTGGTTGAAGGCAAGAATTTT
TCCCCATGCAACGTTTTGAAAATGTTGTAGATGGAACAGTCATTCATAAT
TTCCTTGGAAATAGAAATATTTAATGGTTGCATAACCCATACTCTACATA
ATTTCCAGTACCAAACATGGTGTTGGTCTTGACATGTTGATTAAATATGC
ATTTCCTCATTCTCCTCCTACATGAGAGAAGTTGGGCTACATAATTGCAA
GGTCCCATTACTTTC

NNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAACTCTGTACCCCATTT
TTCTATAGGGTTATTTGATTCTCTGGAATCTAACTTCTTGAGTTCTTTGT
AAATATTGGATATTGGTCCTCTATCGGATGTAAGATTGGCAAAGATCTTT
TCCCAATGTGTTGGTTGCTTTTTGCTGGAAAAAAAAAAAAGCCTGATATG
GCTGTCTCCTGAGTGGCCCTGCTAGAGCCTTTTAAATACAGAGGATGATG
TTAGCAGCCAACCATTGGAATGAGCGTGGAGTCCCTAATAGAGGAGTTAG
ATAAGGGACTGACAGAGTAGAAGGGTTTTGCAACCTCATGGGAAGAACAA
CAATATCAACCAACCAGACACCCCCTCCCCTCCAACCCAGAACTCCCAGG
GACTAATCAACAAAGGAGTACACATGGCTCTAGCTGCATATTTCGAAGAG
AATGACCTTTTCATGCATCAATGGTAGGAGAGGTCCTTGGTTCTATGAAA
GCTCGATAGATGCCCCAGTGTAGTGGAACTGAAAGTGGGAGGNTGGGTGG
GTGAACACCCTCATAGAAGCAGGGTGAGGAGGATGTGATAGGGGGTTTCC
CGGAAAGGAGCAAACTGGGAAAGGGGATATATTTGAAATGTAAAAAAGAA
ATATCCATTAAAATTTAAAAAAAATAGATTACTTCTGTAAGGGAAAAAAT
GGTGGGGTAC

Query= MSMg01no504_p23.b1 MSMg01no504_p23.b1 CHROMAT_FILE:
MSMg01no504_p23.b1 PHD_FILE: MSMg01no504_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:48 2005
         (513 letters)



>mm_chr3_140898640_140899552
          Length = 913

 Score =  774 bits (400), Expect = 0.0
 Identities = 485/514 (94%), Gaps = 4/514 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtgtgtgtccttgcgggtgtccagagactcctctggcaaggcaccctggtcctcga 60
           ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||| |
Sbjct: 203 ttctgtgtgggtccttgcgggtgtccagagactccgctggcaaggcaccccggtgctcta 262

                                                                       
Query: 61  gtggactggaagggacttgtgccccaggtcaggccgggttgtctgcttccctagttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtggactggaagggacttgtgccccaggtcaggccgggttgtctgcttccctagttaatg 322

                                                                       
Query: 121 cagtctcaggttccacacgattggattggagcagacgctgtgttccactcatcagaggtc 180
           ||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 cagtctcaggttccgtgcgattggattggagcagacgctgtgttccactcaccagaggtc 382

                                                                       
Query: 181 ctaggatcccatggggaatcctgtgtggctcctggcaggtgtgcagagactctgctggca 240
           |||||||||  ||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 383 ctaggatcctgtggggaatcctgtgtgggtcctggcaggtgtacggagactctgctggca 442

                                                                       
Query: 241 aggcacccccccatgctctg-gtggactgtaatggaccacaaaggatttaaattgactgc 299
           |||  | ||||| ||||| | |||||| | || |||||||||||||||||||||||||||
Sbjct: 443 agg--cgcccccgtgctc-gagtggacaggaagggaccacaaaggatttaaattgactgc 499

                                                                       
Query: 300 tgaatttttagatatattttcttctctgtagtcaatggtttgggtaaagaagattctaaa 359
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaatttttagatatattttcttctctgtagtcaatggtttgggtaaagaagattctaaa 559

                                                                       
Query: 360 tctctttaagtttatgttctaagtaaggtttataaactcaaatgctcaaggctgtagatt 419
           ||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct: 560 tctttttaagtttatgttctaagtaaggtttataatctcgaatgctcaagactgtagatt 619

                                                                       
Query: 420 tagtttggccaatatagtaaagagtttataccaattaaataagatgctattatttggttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagtttggccaatatagtaaagagtttataccaattaaataagatgctattatttggttg 679

                                             
Query: 480 aaggcaagaatttttccccatgcaacgttttgaa 513
           |||||||||||||||||||||||||| |||||||
Sbjct: 680 aaggcaagaatttttccccatgcaacattttgaa 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)