BAC Information

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BAC

Clone NameMSMg01-504P24
Chromosome3 (Build37)
Map Location 17,101,442 - 17,101,685
singlet/doubletsinglet
Overlap genenone
Upstream geneYthdf3, LOC100040034, LOC100040059
Downstream geneEG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504P24.T7 (MSMg01no504_p24.b1)MSMg01-504P24.TJ (MSMg01no504_p24.g1)
ACCAG579744AG579745
length766748
length of high quality
(start - end)
589 (50 - 638)545 (69 - 613)
definitionCHROMAT_FILE: MSMg01no504_p24.b1 PHD_FILE: MSMg01no504_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:48 2005CHROMAT_FILE: MSMg01no504_p24.g1 PHD_FILE: MSMg01no504_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCGGATGTCCAGAAATTCATTATATACTAAAGAGACTTTGT
CTCAAAAACAAAAATAAAAATAAAAATAAAACAACCCAAATGTACAAGAG
TAACGTTCTTTGTTCTAGAATATACAATTTTAATGGTTAAAATAGAATTG
CACTAGCATATAGTGAAACAAATTAGAAGAATAGAAAATCCAGCCTCGAA
CCTATGGAAGAATAATTTTGACTCAGTTAATGTTTTAAATTGGGACTATA
TTATTATTTTTAAAAGATTAGGAAAGCAATAGACAGGGTTGTTGCTTGTG
TAAAGAAATACAGAATGGCAATTATAAGTTGGATATTAACTCTTAAACTC
AGAAATAAATTGTAGATGGATGAAGGATGTAAGTGTAAAATTAACGTGTA
GCCATTAATTGTTTGGAACATTGAATTTGTTTTTGACTCTAAGAAATCCA
GGAATTTTAATTGTGAAATAAATCTCTGAAGTTGCCTCAACAAATGATTT
ACTCAATCAAATACAAATAAATCTTTCATCACTCTAGATAAATGACAATT
TGAGAAAGAATAACTGCAATTTATGTAATATTGAAAGAGTGGTACTTTCA
CATGGAAATATTTCTACAAAGCCACACATAAGTCTCACAATATGAAGCAA
AAATTACAAATATGGAAACACTTTTAAAAAGAAAAAATAGCTTAACTAAT
TAAATTACTGAATCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTAGAATGCAAATTGTCTACAGGAA
ATATAAGGACAAAGATTGGAATAGAGCCTGAAGGAAAGGTCATTCAGAGA
CTGCCACACTTGGGAATCCATCCCTTATACAGACAGCAAACCCAGACACT
ATTGCTGATGCCAAGAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCT
CCTGGGAGGCTTTAACAGAGCCTTACAGATGGGGATGCTTGCAGCCAAAC
ATCAAACTGAGCAAAGGTACCCCAATGGAGGAATTAGGGGATGGACTGTA
GGAGCTGAAGGGGTTTGTAATTCCACAGGAAAAACAACAATATCAACCAA
CCAGACTCCCTAAATCCCCCAGGGACTACACTGCCAACCACAGAATACAT
ATGGAGGAACCCATGGCTCTAGCTGCATATATAGTAGAGGATGGTCTTAT
CTGTCATCAATAGAAGGGAAGACCCTTCATCCTGTAAAGGCTGGATGCCC
CAGTATAGGGGAATGCTAGGTTGAGGAGGTAGGAGGGACTGAGTAGGGGA
GCACCCTCCTAGAAGCAGGGGAAGGAGGAAGGGATAGGGAGTTTGTGGAG
GGGAAACTGTNGAGGGGGATANCCTTTTNTTTTGTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTATTGTTCGTATTATATTTTTTCTATTCCCGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_p24.b1 MSMg01no504_p24.b1 CHROMAT_FILE:
MSMg01no504_p24.b1 PHD_FILE: MSMg01no504_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:48 2005
         (589 letters)



>mm_chr3_17101238_17102226
          Length = 989

 Score =  402 bits (208), Expect = e-116
 Identities = 235/244 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcggatgtccagaaattcattatatactaaagagactttgtctcaaaaacaaaa 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagatgtccagaaattcattatatactaaagagactttgtctcaaaaacaaaa 264

                                                                       
Query: 65  ataaaaataaaaataaaacaacccaaatgtacaagagtaacgttctttgttctagaatat 124
           ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ataaaaacaaaaataaaacaccccaaatgtacaagagtaatgttctttgttctagaatat 324

                                                                       
Query: 125 acaattttaatggttaaaatagaattgcactagcatatagtgaaacaaattagaagaata 184
           | ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 325 aaaattttaatggttaaaatagaattgcactagcacatagtgaaataaattagaagaata 384

                                                                       
Query: 185 gaaaatccagcctcgaacctatggaagaataattttgactcagttaatgttttaaattgg 244
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaatccagtctcgaacctacggaagaataattttgactcagttaatgttttaaattgg 444

               
Query: 245 gact 248
           ||||
Sbjct: 445 gact 448



 Score =  120 bits (62), Expect = 3e-31
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                       
Query: 524 ctttcatcactctagataaatgacaatttgagaaagaataactgcaatttatgtaatatt 583
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttttatcactctagataaatgacaatttgagaaagaataactgcaatttatgtaatatt 506

                 
Query: 584 gaaaga 589
           ||||||
Sbjct: 507 gaaaga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)