BAC Information

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BAC

Clone NameMSMg01-505A01
Chromosome3 (Build37)
Map Location 86,961,539 - 86,962,104
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1
Downstream geneLOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505A01.T7 (MSMg01no505_a01.b1)MSMg01-505A01.TJ (MSMg01no505_a01.g1)
ACCAG579746AG579747
length750751
length of high quality
(start - end)
571 (50 - 620)578 (81 - 658)
definitionCHROMAT_FILE: MSMg01no505_a01.b1 PHD_FILE: MSMg01no505_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:48 2005CHROMAT_FILE: MSMg01no505_a01.g1 PHD_FILE: MSMg01no505_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGACTTTGCCATTCTTTTGGTTTTAATCATCTCAGAGGGC
AACCAGAGCTGAGCTGTGGGGGAGGGGACAAAATGAAAACCAGGGCCTTC
GACTTCCAGCTTGCAGGACTCCATAAAGAGTAAAACTTTCCTGATGGAGG
GAGGCTTCTTGTCCTTCCACCTTGACCCTCGGGACCTGGCATCTGTCCCC
TGCGTGGAGTTTGCCTCCAGGAGAGAACCCGTCCTCACTAGGCCTCCCAT
TGTATCTGTTTACAGATTCTCAATTTTAAAGTACTGACCTTTCAGTTTTC
CAGCCAAATTGCAAGTTCCCCAAGGCCCCGGGATTACGCGTTGTTCAAAA
CAAAACAAACAGCAAACTCCAGGCTCGTTCATGAGCCTTAGCTTTTCTTC
ATGTTCACTGCTGGGAAAGCAGAGCAGGGAAAGCATTGAAGGGGCTGAGT
GGAACCTACTATGGTAGGAAGGGAAGGCTCAAGGACAGCCTATGGCAGAG
GTATGGGTCAGTAGAGGCCTCTGGAGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTNTNTTTNNTTTTTTTGTTGCTTTGTTGTT
GGTTGTTCTCCTTCTTTTCTTTTTCTCTCCTCTCTTCTCTTTTTTTTTCC
CCCCCTTTTTCCCCCCGTTCCCCCCTCTCTCTCTTTTCTTCCTTTTTCTC

NGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGCTGGTGGGATTGCAGGCTTGTACAGCCACTCT
AGGAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCATCCAGAAGATGTCCCAACCGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGGAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAACGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAAC
ACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_a01.b1 MSMg01no505_a01.b1 CHROMAT_FILE:
MSMg01no505_a01.b1 PHD_FILE: MSMg01no505_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:48 2005
         (571 letters)



>mm_chr3_86961379_86962349
          Length = 971

 Score = 1064 bits (550), Expect = 0.0
 Identities = 562/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagactttgccattcttttggttttaatcatctcagagggcaaccagagctgag 64
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattccagacactgaaattcttttggttttaatcatctcagagggcaaccagagctgag 667

                                                                       
Query: 65  ctgtgggggaggggacaaaatgaaaaccagggccttcgacttccagcttgcaggactcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctgtgggggaggggacaaaatgaaaaccagggccttcgacttccagcttgcaggactcca 607

                                                                       
Query: 125 taaagagtaaaactttcctgatggagggaggcttcttgtccttccaccttgaccctcggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 taaagagtaaaactttcctgatggagggaggcttcttgtccttccaccttgaccctcggg 547

                                                                       
Query: 185 acctggcatctgtcccctgcgtggagtttgcctccaggagagaacccgtcctcactaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acctggcatctgtcccctgcgtggagtttgcctccaggagagaacccgtcctcactaggc 487

                                                                       
Query: 245 ctcccattgtatctgtttacagattctcaattttaaagtactgacctttcagttttccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcccattgtatctgtttacagattctcaattttaaagtactgacctttcagttttccag 427

                                                                       
Query: 305 ccaaattgcaagttccccaaggccccgggattacgcgttgttcaaaacaaaacaaacagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaaattgcaagttccccaaggccccgggattacgcgttgttcaaaacaaaacaaacagc 367

                                                                       
Query: 365 aaactccaggctcgttcatgagccttagcttttcttcatgttcactgctgggaaagcaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaactccaggctcgttcatgagccttagcttttcttcatgttcactgctgggaaagcaga 307

                                                                       
Query: 425 gcagggaaagcattgaaggggctgagtggaacctactatggtaggaagggaaggctcaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcagggaaagcattgaaggggctgagtggaacctactatggtaggaagggaaggctcaag 247

                                                                       
Query: 485 gacagcctatggcagaggtatgggtcagtagaggcctctggagtgtgtgtgtgtgtgtgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gacagcctatggcagaggtatgggtcagtagaggcctctggagtgtgtgtgtgtgtgtgt 187

                                     
Query: 545 gtgtgtgtgtgtgtgtgtgtgtgtgt 570
           ||||||||||||||||||||||||||
Sbjct: 186 gtgtgtgtgtgtgtgtgtgtgtgtgt 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)