BAC Information

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BAC

Clone NameMSMg01-505H06
Chromosome3 (Build37)
Map Location 114,646,359 - 114,646,983
singlet/doubletsinglet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5, LOC626061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505H06.T7 (MSMg01no505_h06.b1)MSMg01-505H06.TJ (MSMg01no505_h06.g1)
ACCAG580088AG580089
length757750
length of high quality
(start - end)
643 (50 - 692)605 (69 - 673)
definitionCHROMAT_FILE: MSMg01no505_h06.b1 PHD_FILE: MSMg01no505_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:22 2005CHROMAT_FILE: MSMg01no505_h06.g1 PHD_FILE: MSMg01no505_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCTTTTCATTGTCATAGGATGAGATTTTTAACTTCTAAAT
AGTCTAGAACTTAGAAATTTAAAAATAAATTGGATAAAGATTTCTCCAAA
GCACAACCTTTTAAAACTTCAAATTCTCAGTTCCTTCTCACATATTATAG
TCTTTAAAGCTGTCAGATTTGTAGACATGGACAAGCACAACTAAGGCTTA
TTGTTCACTGTGAACAATAACAGCACAAGTGTGTACTTATAATCAAGTAA
TTACATGATAAAAATGCCTTAGGCTCACGGCACATTTGTAAATCTATGCT
TTTGGTGTGCAAATGATTCTTATGTAAGAAAAATTATCCCTAGATGCATT
AACTGACTTATCCAGAGTTGAGATTTGTCAAAATATCTGTCTCCAGAACT
TTGATATAAAAATCAGACAATTAAACATGTTACAACATGATCTAGAAAGG
CTAACAGAAGACATTAAGTCAAGACCATATAATTTAACATGGCTTTCTCT
CAGGTTCTTCTAGAGTATAGCCTTTTAAATGATTAGAATTGATTGAGCTA
GGAGTTTCTGCAGTATGTCAGATAAAGTCATGACATTGTTATTAAAATTG
GGAAAGACTACTTAAATATTTCACGTTTTTCAAAAGGAAAATTCATGCAA
GATATGTTAATATCATTCAAATAACACTAGTAGCTATAGCCTTAACTTTT
CTTACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATAGAAAGAAATGCACCAAAAAAGTTCTGGT
GATATACCAAGGCTTCTTGGCACTTCTGCTGATTTGGGCTGAGGCAAGAC
CCATGGAGTACATGTGATGTTTGGAGGGAGTATTAAAAGTACTCAACGGA
CAGTGATGGGGGCTGAGCTTGGCTTACTTATAGAGTTAACTATACAACAC
TTACCGGTATCAAATCTTCCTGACCTTCACTTTGCTGACAGATGCACAGC
TGAGAACTTCTGGTTTCCTCCTGCTGATCCCTGCTGATGCTGACTCATGC
CACAGTTGAGGCATGGCTATCTCTGCTAGGTAGTGGAACAGCTGCTGATT
CGTGCTTGCTACACCAGCTCTACAGAGCTGGACTGCTGGTATATCTGTAA
AATGTTTATGAGTGGATCAAGCTGCCATTGCTGGCCTGTGAAATAAACTA
CAGATTTCCAGACAACACAAATGGGAGTTGCTCTAAAGATCCTTTCTCAA
CAGGTCCACTCCCCACCCCCCACCCCCGCTAATCCTTTCTTTTTGACTAC
CTCTGGTGGGTGGTGGGTTACAAGGGATGTTAAAGTGTTTAAAAACAATC
ACTAGAAATAGACTTAAAAAAAAAACTTCAAGTTACAGAGGACAGAAAGA
GACATTGAGAGAGAAGGGGAGCTATTTAACTTATGACTTACTTACATTAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_h06.b1 MSMg01no505_h06.b1 CHROMAT_FILE:
MSMg01no505_h06.b1 PHD_FILE: MSMg01no505_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:22 2005
         (643 letters)



>mm_chr3_114646141_114647183
          Length = 1043

 Score = 1201 bits (621), Expect = 0.0
 Identities = 624/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  attgtcataggatgagatttttaacttctaaatagtctagaacttagaaatttaaaaata 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 attgtcataggatgagatttttaacttctaaatagtctagaacttagaaatttaaaaata 784

                                                                       
Query: 79  aattggataaagatttctccaaagcacaaccttttaaaacttcaaattctcagttccttc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aattggataaagatttctccaaagcacaaccttttaaaacttcaaattctcagttccttc 724

                                                                       
Query: 139 tcacatattatagtctttaaagctgtcagatttgtagacatggacaagcacaactaaggc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcacatattatagtctttaaagctgtcagatttgtagacatggacaagcacaactaaggc 664

                                                                       
Query: 199 ttattgttcactgtgaacaataacagcacaagtgtgtacttataatcaagtaattacatg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttattgttcactgtgaacaataacagcacaagtgtgtacttataatcaagtaattacatg 604

                                                                       
Query: 259 ataaaaatgccttaggctcacggcacatttgtaaatctatgcttttggtgtgcaaatgat 318
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 603 ataaaaatgccttaggctcacggcacatttgtaaatctatgcctttggtgtgcaaatgat 544

                                                                       
Query: 319 tcttatgtaagaaaaattatccctagatgcattaactgacttatccagagttgagatttg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcttatgtaagaaaaattatccctagatgcattaactgacttatccagagttgagatttg 484

                                                                       
Query: 379 tcaaaatatctgtctccagaactttgatataaaaatcagacaattaaacatgttacaaca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcaaaatatctgtctccagaactttgatataaaaatcagacaattaaacatgttacaaca 424

                                                                       
Query: 439 tgatctagaaaggctaacagaagacattaagtcaagaccatataatttaacatggctttc 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgatctagaaaggctaacagaagacattaagtcaagaccatataatttaacatggctttc 364

                                                                       
Query: 499 tctcaggttcttctagagtatagccttttaaatgattagaattgattgagctaggagttt 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctcaggttcttctagagtatagccttttaaatgattagaattgattgagctaggagttt 304

                                                                       
Query: 559 ctgcagtatgtcagataaagtcatgacattgttattaaaattgggaaagactacttaaat 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgcagtatgtcagataaagtcatgacattgttattaaaattgggaaagactacttaaat 244

                                    
Query: 619 atttcacgtttttcaaaaggaaaat 643
           |||||||||||||||||||||||||
Sbjct: 243 atttcacgtttttcaaaaggaaaat 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)