Query= MSMg01no505_m15.b1 MSMg01no505_m15.b1 CHROMAT_FILE:
MSMg01no505_m15.b1 PHD_FILE: MSMg01no505_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:47 2005
(350 letters)
>mm_chr3_85369650_85370399
Length = 750
Score = 661 bits (342), Expect = 0.0
Identities = 348/350 (99%)
Strand = Plus / Minus
Query: 1 gaatgttcaatttactccaagggattggttttaatcttctgcaggaaaaggaatttcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaatgttcaatttactccaagggattggttttaatcttctgcaggaaaaggaatttcata 491
Query: 61 aattgaaattgttggccagatggaatttcctgattaattttttagtgtttggtattaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aattgaaattgttggccagatggaatttcctgattaattttttagtgtttggtattaaat 431
Query: 121 gtaataatgaaaaagggagttctaagagtaaacccgattaacatttcataaaatttattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtaataatgaaaaagggagttctaagagtaaacccgattaacatttcataaaatttattg 371
Query: 181 ctctaaatatggcttatcctccactttacagttgctactgcctgcctccgtggagaacct 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctctaaatatggcttaccctccactttacagttgctactgcctgcctccgtggagaacct 311
Query: 241 cattgtactttgaaaaatcgaacatggtcaacttgcctctttcctcccacccagctcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cattgtactttgaaaaatcgaacatggtcaacttgcctctttcctcccacccagctcttc 251
Query: 301 cttttctttttgctgaacttctttttgagatttatacaaattcatggaat 350
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 cttttctttttgctggacttctttttgagatttatacaaattcatggaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_m15.g1 MSMg01no505_m15.g1 CHROMAT_FILE:
MSMg01no505_m15.g1 PHD_FILE: MSMg01no505_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:47 2005
(556 letters)
>mm_chr3_85232027_85232983
Length = 957
Score = 928 bits (480), Expect = 0.0
Identities = 536/558 (96%), Gaps = 11/558 (1%)
Strand = Plus / Plus
Query: 1 actgaatcccagagtgaacaagctacctagaggtgaggagtagggtggggtgagctctaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 201 actgaatcccagagtgaacaagctacctagaggtgaggagtaggatggggtgagttctaa 260
Query: 61 agggttcctgggacacctgcccctacagagggcagaactct-atctccagagactgacca 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agggttcctgggacacctgcccctacagagggcagaactcttatctccagagactgacca 320
Query: 120 tagacctaggagagctttgaggagaggggatggaactggactagaagtcactagattggg 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacctgggagagctttgaggagaggggatggaactggactagaagtcactagattggg 380
Query: 180 tggatctatccagatgtcttcgtgccctctggtgggcaggggggggttc-taagaatcag 238
|||||||| ||||||| | ||| |||||||||| |||||| ||| ||||||||||
Sbjct: 381 tggatctacccagatg-c--cgt-----ctggtgggcaagggggg-ttcctaagaatcag 431
Query: 239 atatttttgcacttctccagacatctctgttatcacacacttttgtcctgcccacagtag 298
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgttaaagcacttctccagacatctctgttatcacacacttttgtcctgcccacagtag 491
Query: 299 tagtctctgaaactcctgtccttttagacatttagtgttaaaaggaacttgttataaaaa 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tagtctctgaaattcctgtccttttagacatttagtgttaaaaggaacttgttataaaaa 551
Query: 359 gtgtttaaatgttaaagatgcatttatcgtcttgtttcagaatcccccagactcctcatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtgtttaaatgttaaagatgcatttatcgtcttgtttcagaatcccccagactcctcatt 611
Query: 419 gttttgcttccaagtgcttatccatttgtcactgtgtacatgctcagaggattatttgga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gttttgcttccaagtgcttatccatttgtcactgtgtacatgctcagaggattatttgga 671
Query: 479 tcaatgtctcctcagcttgactgaggtgcccgagggcctggacatacgtgctcttgccag 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 672 tcaatgtctcctcagcttgactgaggtgcccgagggcctggacatacgcgctcttgccag 731
Query: 539 ttttcccagttttgccag 556
||||||||||||||||||
Sbjct: 732 ttttcccagttttgccag 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
