BAC Information

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BAC

Clone NameMSMg01-505O01
Chromosome3 (Build37)
Map Location 101,207,553 - 101,208,246
singlet/doubletsinglet
Overlap geneIgsf3
Upstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490
Downstream geneLOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505O01.T7 (MSMg01no505_o01.b1)MSMg01-505O01.TJ (MSMg01no505_o01.g1)
ACCAG580407AG580408
length763762
length of high quality
(start - end)
681 (46 - 726)593 (76 - 668)
definitionCHROMAT_FILE: MSMg01no505_o01.b1 PHD_FILE: MSMg01no505_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:53 2005CHROMAT_FILE: MSMg01no505_o01.g1 PHD_FILE: MSMg01no505_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAATTCCTTTTCTCTGCTGTATTCAAGGTCTTTCTGAATTTTG
GAGATAATCTGCACTGGCTCCATCAATCCAGCCCACCAATCACCACCAGG
CAGGTCCAATGTGGGGGGGGGGGTAAACATCAAGTACAAACTTCTTATCT
AGAGACTCGAGGCTTAATTAGTATCTCGTGTAGCTCAGGCTGGCCAGAAA
CTCATGATATAGCTGCAGATAATCCTGCCACCTGAGCCTCTAGGTGGCTG
GGATGAACTTGGTTTTCTGGTCCCACTCCACCTCTGCTGCCCGACTTCCA
CTGACCCCTCCAAACACTATTCTGTGACCTGGTGAGCGGAAAGCCATCAC
CCCCAAGCCCACCATCTATAAATCATAGCTCTGGTTTTTCCATATATTGT
CATTTGTGGGCAACCCAAAAAACAAGGAGGAAGAGGAAGGAAGAGACAAA
CTACAGAAGGAAGAGGGGACAGAAGAAGGAACAACCGGGAAGACAGCAAC
CGGCTCTGACAGGCCAGGCCCTCCACTAAGGGGCTCCACTTCAGCCACAC
ATGGAGATACCACACGTCCAGCCGGGCCGGCATATCTGCCCAGGGTCCCA
CAGAGCATGTGCAGCCTGAGCCATTCCACCCACGTGGCTTCCCAGGGAAG
TCCCAGGAAAGGAGACAAGCGTGGGATTTAGGACAAAAGCAGAGCTGGTG
CCAGTGTACGGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCTGAAAGAAGGGATTAAAACGCAACTTTCTGGGCACAC
CTGTGAGTGATTTTCAGTTAATTAGATCATTTGAGGTCAAAAGACCCACC
CTAAATGTAGGCCACGCCTTCACACAGCAGCTGATATAAAGAAGAAGGAA
GAAATGAGTTTATGCTCTTTGCCTGCTTGTCCTACCTCTCGCTGAGAAGT
TCATTCCTTCTCTGGCATTGGAGCCTACTTCTTCAGGATTCCAGCGTGAA
GACCAGATGAGACATTCTTTTTTGTGACCTGAACAACTACTGGATTCTTA
GGCTTTCTGTTGGTAGACAGCATTGTTGGACTAGCTAGACCTCAGCTTGT
AAGTCATTATAATAAATTACATATATGTCCCACATGTACATATATATTAT
TTATTATTATGTTATATATATATATAACATAATAATAAATAATATATATG
TGTATATATATATACATACACACACACACACACACACATATACACACATA
CATATATTCTATTCGTTTTATACCTCTAGAGAACCCTGACTAGTTCAGCA
ATATAAGGATCTGAATTCTGATCCCTAAGACCCACATAAAAAGCCAGACA
TGGTGATGTGAACCTGAGACCCCCAAGGCTAGGGGTGGAAGGATCAGAGA
CAGGAGGCTCCCAGAGGCTCATGGGCCGACCAGTCTAGCCAAGCAGGTGA
GAGCTCAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_o01.b1 MSMg01no505_o01.b1 CHROMAT_FILE:
MSMg01no505_o01.b1 PHD_FILE: MSMg01no505_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:53 2005
         (681 letters)



>mm_chr3_101207259_101208339
          Length = 1081

 Score = 1154 bits (597), Expect = 0.0
 Identities = 663/699 (94%), Gaps = 27/699 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaaattcct-tttctctgctgtattcaaggtctttctgaattttggagataat 63
           |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 988 gaattctgaaa-ccctctttctctgctgtattcaaggtctttctgaattttggagat-at 931

                                                                       
Query: 64  ctgcactggctccatcaatccagcccaccaatcaccaccaggcaggtccaatgtgggggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 930 ctgcactggctccatcaatccagcccaccaatcaccaccaggcaggtccaatgt---ggg 874

                                                                       
Query: 124 gggggtaaacatcaagtacaaacttcttatctagagactcgaggcttaattagtatctcg 183
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 873 ggggataaacatcaagtacaaagttcttatctagagactcgaggcttaattagtatctcg 814

                                                                       
Query: 184 tgtagctcaggctggccagaaactcatgatatagctgcagataatcctgccacctgagcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgtagctcaggctggccagaaactcatgatatagctgcagataatcctgccacctgagcc 754

                                                                       
Query: 244 tctaggtggctgggatgaacttggttttctggtcccactccacctctgctgcccgacttc 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 753 tctaggtggctgggatgaacttggttttctggccccactccacctctgctgcccgacttc 694

                                                                       
Query: 304 cactgacccctccaaacactattctgtgacctggtgagcggaaagccatcacccccaagc 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cactgatccctccaaacactattctgtgacctggtgagcggaaagccatcacccccaagc 634

                                                                       
Query: 364 ccaccatctataaatcatagctctggtttttccatatattgtcatttgtgggcaacccaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ccaccatctataaatcatagctctggtttttccatatattgtcatttgtgggcaacccaa 574

                                                                       
Query: 424 aaaacaaggaggaagaggaaggaagagacaaactacagaaggaagaggggacagaagaag 483
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 573 aaaacaaggaggaagaggaaggaagagacaaactacagaaggaagcggggacagaagaag 514

                                                                       
Query: 484 gaacaaccgggaagacagcaaccggctctgacaggccaggccctccactaaggg------ 537
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||      
Sbjct: 513 gaacaaccgggaagacagcaaccggctctgacaggccaggccctccactgagggctttac 454

                                                                       
Query: 538 --------gc-------tccacttcagccacacatggagataccacacgtccagccgggc 582
                   ||       ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 453 atgtgactgcattcaactccacttcagccacacatggagataccacacatccagccgggc 394

                                                                       
Query: 583 cggcatatctgcccagggtcccacagagcatgtgcagcctgagccattccacccacgtgg 642
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 cggcatatctgcccagggtcccacggagcatgtgcagcctgagccattccacccacgtgg 334

                                                  
Query: 643 cttcccagggaagtcccaggaaaggagacaagcgtggga 681
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttcccagggaagtcccaggaaaggagacaagcgtggga 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)