BAC Information

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BAC

Clone NameMSMg01-506D03
Chromosome3 (Build37)
Map Location 91,897,166 - 91,897,660
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor
Downstream geneA030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506D03.T7 (MSMg01no506_d03.b1)MSMg01-506D03.TJ (MSMg01no506_d03.g1)
ACCAG580649AG580650
length755768
length of high quality
(start - end)
537 (54 - 590)496 (81 - 576)
definitionCHROMAT_FILE: MSMg01no506_d03.b1 PHD_FILE: MSMg01no506_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:18 2005CHROMAT_FILE: MSMg01no506_d03.g1 PHD_FILE: MSMg01no506_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACACCCCTTAGCCCCTTACCACACAAAAACCCCTAG
CTTTCAAGCCTCATGGCCAACATCCGTTATCTCCTGTGTGGGATAAATGT
CGGTCCAGAGCTCCGTAGTTAAATGTCCTCATGTATTTACATCAAGAGAT
GGTCCTTCGTGATTTTTTGGGTGCACGCCGATCGGGAATTGGGTGGGGGT
TTCCCCACTAGATCTAACAGTTGTTGCTCCATAAGATTCAGAGGCAATAT
CTTTATAATAGTTAGGGTTTTAGTTATACTATAACGTTGTGGTACAGAAA
ATCTAAGGATGAACAATTGATTTGCTTCAAAATTTTCTTTTCAAAAGCTT
CCAGGAAATGTTAATTGGCTAAGACCTAACCTTAAGGTCTTAAAGTGACT
TAAATTTTTGTTGGATGTTATCTTGAGAGACACCAATTAACTGGTAAAGA
ACATAAGGCTTTGCAGAAAATAAAGAAAGCTTTTATAATTGCTATCAATT
ATACTCAATGGTAATTAAATATTAGCTGCTTATTTTAGTGATGGTTATTA
AATGTGCCCACAGCAATTCTTTGGCTAGGGAAAACATTAATGTAAAATCA
TCTTTCTTTGCCTCACAGCAAAGTTTTACCATCCTATTAAGGCTGCTGTG
GTGCCAATAAAGAATTGTAAGATAAATTTGCATACTCTAGAAAACCTATA
CCTAN
TTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCCAGAAGCTTCTGAAA
AAAAGATGACAATTAAGTAAATGAGATAAAATCAGCATACATAGAGAAAT
CAAGGATTCTATAAAGGAAAACAGAGGCTGGAGCCCAAGATTATGTCCAA
AAAAGTCAGGGCCACCAAGAGGAAGTTTTGAGACAGGTAAGGCACTCTAT
ACACAATCGGTTGTTGTCACTGGCCTGCTTTATAACTTTACTGTTCATAC
AAGAGAAGGTGCTCACAATCCACAGTAGTGCATTGGAGACAATCAGACTC
AAAGAAATCAGTTCAGACACCTCAAGGCAGCTGAAGGTCTAAGAGTGAAG
ATGGGGCGTGAGTAACAGAACTCAGCAATGAAGTTTTATTGAGACCACAG
AGGGTTGCACAGACCAAAGAGTGGCACTGGGTTATCTGCCTAACAGTGTC
ACAAGAAAGTCAGCTTCTGAAGGTTGTACAAAAAGGAAGTAAAACTTGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAATAATTATATCCAACTTTTGATGCATACC
ATATTTCGATTAATACAAATTTTATGTCACTGATTTTGTTCCTGCTGTGT
CATTTTGCTCGTTGTAAAAGGGACTTTTTGTTTTGCATCGTTTCTACTGG
ACTTCCCATCTTAGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_d03.g1 MSMg01no506_d03.g1 CHROMAT_FILE:
MSMg01no506_d03.g1 PHD_FILE: MSMg01no506_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:19 2005
         (496 letters)



>mm_chr3_91896995_91897889
          Length = 895

 Score =  920 bits (476), Expect = 0.0
 Identities = 491/496 (98%), Gaps = 1/496 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcccagaagcttctgaaaaaaagatgacaattaagtaaatgagataaaatcagcatac 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tggcccagaagcttctgaagaaaagatgacaattaagtaaatgagataaaatcagcatac 607

                                                                       
Query: 61  atagagaaatcaaggattctataaaggaaaacagaggctggagcccaagattatgtccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atagagaaatcaaggattctataaaggaaaacagaggctggagcccaagattatgtccaa 547

                                                                       
Query: 121 aaaagtcagggccaccaagaggaagttttgagacaggtaaggcactctatacacaatcgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 546 aaaagtcagggccaccaagaggaagttttgagacaggtaaggcactctatacacaatcag 487

                                                                       
Query: 181 ttgttgtcactggcctgctttataactttactgttcatacaagagaaggtgctcacaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgttgtcactggcctgctttataactttactgttcatacaagagaaggtgctcacaatc 427

                                                                       
Query: 241 cacagtagtgcattggagacaatcagactcaaagaaatcagttcagacacctcaaggcag 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cacagtagtgca-gggagacaatcagactcaaagaaatcagttcagacacctcaaggcag 368

                                                                       
Query: 301 ctgaaggtctaagagtgaagatggggcgtgagtaacagaactcagcaatgaagttttatt 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgaaggtctaagtgtgaagatggggcgtgagtaacagaactcagcaatgaagttttatt 308

                                                                       
Query: 361 gagaccacagagggttgcacagaccaaagagtggcactgggttatctgcctaacagtgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagaccacagagggttgcacagaccaaagagtggcactgggttatctgcctaacagtgtc 248

                                                                       
Query: 421 acaagaaagtcagcttctgaaggttgtacaaaaaggaagtaaaacttgagagagagagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acaagaaagtcagcttctgaaggttgtacaaaaaggaagtaaaacttgagagagagagag 188

                           
Query: 481 agagagagagagagag 496
           ||||||||||||||||
Sbjct: 187 agagagagagagagag 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 9
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space:   430110
Effective search space used:   430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)