TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTGTGTTTGCTGTGATTGCAAATGTCTGCCACAACTTCAGGCTC
CTGCCTGCCACATTCACAGCAACTGGAGTATTCTGGGGAACAAACTCAGA
TTCTTGGTTTTGCCAGGCTAGTATTTTCTGTCCTGAGCCGTCTTCCCAGC
ACTGTGCTTCAACTTTGCTCATTATACTATTCATCCCTTGTCACCAGTAT
TTACTTTCATGTCTCGTGCATATCATTCCAAGTTTTTGTCCTTTTCTCCT
TTCCCCACAAAAACAATTTTCCTGATTATACTGATTATGATTACACCACG
TCTACTCATACTGCACTATTGCTTTTTCTCCTCACAACTTTGGTCCTGTT
AAAGCTAATCTCTGTCTTACCTCAGAGAATACTTACTTTCCTGTATGTCT
GGGAAAGTTTTAAACCCTAGTCATACTCTAAATTTCCCCTGGAGTCCTTA
GCTCACATCTGGCGTGTCTCCCCACTCATTCTGTCTTCCAGGAGCCTCTC
CTCAGCCTCTTGAACTCTTCTCACAGATTCACTCCTCCGTACAGATGCCT
TTGGCTGAGAGAGAGCTCATTGTCGAGAATGGCAAAATTAAGTTGATTTG
AGTTTTAGATGTGGGTAAGTCTCATCCAATATGGGCGGAAGTGGAGGAGT
TCTTAGGCAAGTTGTTTTTACCATTGGCCACCTGATTATCATTAACTGTA
AAAGATATTTCCGACTGG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTACCTCTATACCCAGTTTT
TTAATAGGGTTATTTGATTGTCAGGAGTCTATTTCTTGAGTTCTTTTTTA
TATATTGGATATTAGCCCTCTATCAAATGAAGGGTTGGTAAAGATCTTTT
CCTAGTCTGGTAGTTGCCATTTTATACTACTGACAGTGTCCCTTGCCTTG
CAGGAGCTTTGCAATTTTATGAGATCCCATCTGTCTATTATTGATCTTAG
AGCATAAGCTATTGGTGTTCTGTTCAGAAAACTTTCCCCTTTACCGATGT
GCCTAAGGCTCTTCCCCGTTTTTTTTTCCTATTAGTTTTAGTGTATCTGG
TTTTATGTGAATGTCCTTGATCCACTTGAACTTGGGCTTAACCAAGGAGA
TAAGAATGGATCAATTTGCATTCTTCTATATGTTAACCTTCAGTTGAACT
AGGACTATATGTTGAAAGGGCTATCTTTTGATTATTATGTAATGGCAAGA
CTTTCTTTTCTGACCTGGGGGAGTCATCTTGGTTCCTGGATCCCCCAGAA
ACTAGTCTGCACAGGTGAGAGTGTGGACTACAGAAGCTAACAGCTTCTGG
AACAGGCAGAAGCGACACAGCTTCTTGGGCAGACCCCATTTCAGGCTCCA
GACATCTGGGCACCTTAGCTTCCAGAGGAGAAGTCTCAACCCCACCCAGG
AGGGCTTTGCCTGAGCCCCTGT

Query= MSMg01no506_h20.b1 MSMg01no506_h20.b1 CHROMAT_FILE:
MSMg01no506_h20.b1 PHD_FILE: MSMg01no506_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:43 2005
         (686 letters)



>mm_chr3_24107575_24108670
          Length = 1096

 Score = 1228 bits (635), Expect = 0.0
 Identities = 675/693 (97%), Gaps = 10/693 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattctcctgtgtttgctgtgattgcaaatgtctgccacaacttcaggctcctgcctg 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 ggaattctcctgtgtttgctgtgattgcaaatgtctgccacaacttcaggctcctgcctg 990

                                                                        
Query: 64   ccacattcacagcaactggagtattctggggaacaaactcagattcttggttttgccagg 123
            || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 989  cctcatccacagcaactggagtattctggggaacaaactcagattcttgcttttgccagg 930

                                                                        
Query: 124  ctagtattttctgtcctgagccgtcttcccagcactgtgcttcaactttgctcattat-- 181
            ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  
Sbjct: 929  ctagtattttctgtcatgagccgtcttcccagcactgtgtttcaactttgctcattatac 870

                                                                        
Query: 182  --actattcatcccttgtcaccagtatttactttcatgtctcgtgcatatcattccaagt 239
              |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 869  tgactattcaccccttgtcaccagtatttactttcatgtctcatgcatatcattccaagt 810

                                                                        
Query: 240  ttttgtccttttctcctttccccacaaaaacaattttcctgattatactgattatgatta 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  ttttgtccttttctcctttccccacaaaaacaattttcctgattatactgattatgatta 750

                                                                        
Query: 300  caccacgtctactcatactgcactattgctttttctcctcacaactttggtcctgttaaa 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  caccacgtctactcatactgcactattgctttttctcctcacaactttggtcctgttaaa 690

                                                                        
Query: 360  gctaatctctgtcttacctcagagaatacttactttcctgtatgtctgggaaagttttaa 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  gctaatctctgtcttacctcagagaatacttactttcctgtatgtctgggaaagttttaa 630

                                                                        
Query: 420  ac-----c-ctagtcatactctaaatttcccctggagtccttagctcacatctggcgtgt 473
            ||     | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  acactaactctagtcatactctaaatttcccctggagtccttagctcacatctggcgtgt 570

                                                                        
Query: 474  ctccccactcattctgtcttccaggagcctctcctcagcctcttgaactcttctcacaga 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  ctccccactcattctgtcttccaggagcctctcctcagcctcttgaactcttctcacaga 510

                                                                        
Query: 534  ttcactcctccgtacagatgcctttggctgagagagagctcattgtcgagaatggcaaaa 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509  ttcactcctccgtacagatgcctttggctgagagagagctcattgtcgagaatggcaaaa 450

                                                                        
Query: 594  ttaagttgatttgagttttagatgtgggtaagtctcatccaatatgggcggaagtggagg 653
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449  ttaagttgatttgagttttagatgtgggtaagtctcatccaatatgggctgaagtggagg 390

                                             
Query: 654  agttcttaggcaagttgtttttaccattggcca 686
            |||||||||||||||||||||||||||||||||
Sbjct: 389  agttcttaggcaagttgtttttaccattggcca 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1096
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1086
Effective search space:   734136
Effective search space used:   734136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)