BAC Information

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BAC

Clone NameMSMg01-506K15
Chromosome3 (Build37)
Map Location 19,394,500 - 19,395,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506K15.T7 (MSMg01no506_k15.b1)MSMg01-506K15.TJ (MSMg01no506_k15.g1)
ACCAG581004AG581005
length758751
length of high quality
(start - end)
241 (80 - 320)590 (76 - 665)
definitionCHROMAT_FILE: MSMg01no506_k15.b1 PHD_FILE: MSMg01no506_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:57 2005CHROMAT_FILE: MSMg01no506_k15.g1 PHD_FILE: MSMg01no506_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAGGTAGGG
GCGGAATTCATTACATTTTGCAAAAATCTAGATATATGTATGTGTATGTG
TTAGTAGACTTTAGATATTTTAATTGCTGTAGGAAAGACTTAGCACTTCA
TAATCTCTTCAATTTTTAGAAATGATCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCAGTGCATGTGTAA
GTCAGATTATAACATGTCAAAATTCCATGGAGCTGGAGTTACAAGTGATT
GTAAGCTGCTAGATGTACGTGCTGTTTTTTTTCACGGGNCAAGCACTCTT
AACCACTGAGATCTTTCTCTGGCTCCATTTTTTAATAGGCTTTTTTTTTT
ATTCACTTTATATCCTGATCACAGCCTCCCTCCCTCTTCTCTTCCAGTCC
CACCCTTAGAAATTCCTCTCCCTATTACCACCTCCCCTTCTCTGAGAAGA
AGGGAAAGTCTCCTTGGGTACCACCCCACCCTTGTGGCATCTAGTCCTAG
TAGGTCCAGGCACATTCTCTCTTACTGATGCCCAACCACCTATTCTTAGT
GTGGGCCGTTCTGGTGATGGCGCTGCCCACTTTCCTTCCTTTTTCCCTTT
CTAGTTTTTGTTTGTTTTTGGTTTCCCCCCGTTTTTTCCTCCCGCGTTCC
CCTCTTTTTTTTGCCTGCTTTTTTCCCCCCTTTTTTTACCCTTTTTTCCT
TTCCCCTG
ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCTGCTAAGAGATGCTGGCTGTAC
CATTAGCATGACTTAAAGCACAGTGGAGATTCCCATTGATAATTTAGTGT
GAGTTTTAGCACTATTTGCTTTATCAGGTTAATGAGACACAAGCTGAATT
GAAAGAAGGAAGGAGTCACATATGCATGGAATACTCAAGAAAACTTTCAT
TCAGTTGTCAGTCTTGTGATGAACCTTGAAGGATTAGAGATGTTTTTAGG
AACATAATAAAGAATCACTCATTTATATCCTCCTCATAAAAACAATCATG
ACTCTGCCAGAGGGAATCATGGGAATCACTTTGGGACTCATGGGCAGAAA
TGAGGCTTTGTACATGCTAAGTCTAGACTACTTACTTGTGATTAAAATTT
TGAATTCATTTACCCAATAAATTCCTGTCACACCTTTGCTGTAAAATAGG
CAATCCCTTCTGAGGTGTTATAAAATAGTCAAAGAATCAAAAATGATATT
TTTGAATAAGTGTTATTGTGAAATGCTTTCGAAAGCATGTGCTTGCTATT
AATGACAGGTGGTATATCATGTTCTTCTTGGCCTGTCATCCTGTCTCTGA
GGTACATGTTGTACAAGAAGAAAAGTAGGTAATTATAGTTCACATGAACG
TCAAATTAAGTGTTACTTCCTGATAGTTTTGTAAAGTAGAACTGTGTCAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_k15.g1 MSMg01no506_k15.g1 CHROMAT_FILE:
MSMg01no506_k15.g1 PHD_FILE: MSMg01no506_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:57 2005
         (590 letters)



>mm_chr3_19394300_19395289
          Length = 990

 Score = 1118 bits (578), Expect = 0.0
 Identities = 587/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgctaagagatgctggctgtaccattagcatgacttaaagcacagtggagattccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgctgctaagagatgctggctgtaccattagcatgacttaaagcacagtggagattccca 731

                                                                       
Query: 61  ttgataatttagtgtgagttttagcactatttgctttatcaggttaatgagacacaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttgataatttagtgtgagttttagcactatttgctttatcaggttaatgagacacaagct 671

                                                                       
Query: 121 gaattgaaagaaggaaggagtcacatatgcatggaatactcaagaaaactttcattcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattgaaagaaggaaggagtcacatatgcatggaatactcaagaaaactttcattcagt 611

                                                                       
Query: 181 tgtcagtcttgtgatgaaccttgaaggattagagatgtttttaggaacataataaagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgtcagtcttgtgatgaaccttgaaggattagagatgtttttaggaacataataaagaat 551

                                                                       
Query: 241 cactcatttatatcctcctcataaaaacaatcatgactctgccagagggaatcatgggaa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cactcatttaaatcctcctcataaaaacaatcatgactctgccagagggaatcatgggaa 491

                                                                       
Query: 301 tcactttgggactcatgggcagaaatgaggctttgtacatgctaagtctagactacttac 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 490 tcactttgggactcatgggcagaaatgaggctttgtacatgctaaatctagactacttac 431

                                                                       
Query: 361 ttgtgattaaaattttgaattcatttacccaataaattcctgtcacacctttgctgtaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgtgattaaaattttgaattcatttacccaataaattcctgtcacacctttgctgtaaa 371

                                                                       
Query: 421 ataggcaatcccttctgaggtgttataaaatagtcaaagaatcaaaaatgatatttttga 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ataggcaatcctttctgaggtgttataaaatagtcaaagaatcaaaaatgatatttttga 311

                                                                       
Query: 481 ataagtgttattgtgaaatgctttcgaaagcatgtgcttgctattaatgacaggtggtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ataagtgttattgtgaaatgctttcgaaagcatgtgcttgctattaatgacaggtggtat 251

                                                             
Query: 541 atcatgttcttcttggcctgtcatcctgtctctgaggtacatgttgtaca 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atcatgttcttcttggcctgtcatcctgtctctgaggtacatgttgtaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)