NNNTTAGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGGCGTCCACCCTCTTCAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTAGGATAGTTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACAGTATCTTTTGCCTTGTAGAAGCTTTGC
AGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCAT
TGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTAGAGGCTTT
TCCCCACTCTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGT
TCCTTGATCCACTTAGATTTGACCTTAGTACAAGAAGATAGGAATGGATC
GATTTGTATTCTTCTACATGATAACAACCAGTTGTACCAGCACCATTTGT
TGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGGTCCCTTGTCGAAG
ATCAAGTGGCCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATT
CCATTGGTCTGCTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCA
CAATTGCTCTGTAGTAAAGCTTTAGGTCAGGGATGATGATTCCACCAGAG
GTTCTTTTATCCTTTAGAGAGTTTTCGCTATCCTAGGTTTTTTGTTATT

TTTTTTTCGTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGACTGTCTGGGTGTG
CTAGCCTGTATTGGGGACTACAAGTTCTAAGAATTTGTTGAACAATGAAA
AGTCAAAACGTAAGAAATAACTTATCTGATGCCTCTGCTGACTGAACTAT
ACAATAACTCCAAGATACTTCATGTTTCTTCATTCATCATCATTGTACAT
TAACAATATTTAGAGTAATATGCAGAGGCACAAACCCCTGTTTTAGCAGA
TCCACTTGAAACCCTAAGGAAAGGTTTTTCACAGACTTTACAGAGAAATG
AGAAGTGTTACAGCACAGGAATGCTTTAATTTGAATTGAGTCCACAGTTC
AAATGTGAGATTTCCTCTCAAAAGGTTCTTGCTTTGAAGGCTTTTTCTTA
AACTGATACAAATGCAGAAACTGTAGAACATAGAACTTAATGGAGCACAC
AGGCCACTAGGCACATACCATTATGAGCTATATTTTTCTGGGGTCTTCTC
TTTTCCTGTTTTTTCTGTATAACACTATTCAAAGAGTTATGCTCTACTAC
ATATTCTCCTCCAATAAGCCTCTGAAAATATCAGGGAAACATGTGACTTT
CAGGTGTTTTATATCACTGATTGGACTGTCACCATGAGACAAGTCATGAA
CAAGATGACAGAATGCTGCTGGTAATACACN

Query= MSMg01no506_l23.g1 MSMg01no506_l23.g1 CHROMAT_FILE:
MSMg01no506_l23.g1 PHD_FILE: MSMg01no506_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:03 2005
         (643 letters)



>mm_chr3_13121557_13122599
          Length = 1043

 Score = 1205 bits (623), Expect = 0.0
 Identities = 638/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggactgtctgggtgtgctagcctgtattggggactacaagttctaagaatttgttgaa 60
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgggactgtctgggtgtgctagtctgtattggggactacaatttctaagaatttgttgaa 260

                                                                       
Query: 61  caatgaaaagtcaaaacgtaagaaataacttatctgatgcctctgctgactgaactatac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgagaagtcaaaacgtaagaaataacttatctgatgcctctgctgactgaactatac 320

                                                                       
Query: 121 aataactccaagatacttcatgtttcttcattcatcatcattgtacattaacaatattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataactccaagatacttcatgtttcttcattcatcatcattgtacattaacaatattta 380

                                                                       
Query: 181 gagtaatatgcagaggcacaaacccctgttttagcagatccacttgaaaccctaaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtaatatgcagaggcacaaacccctgttttagcagatccacttgaaaccctaaggaaa 440

                                                                       
Query: 241 ggtttttcacagactttacagagaaatgagaagtgttacagcacaggaatgctttaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttttcacagactttacagagaaatgagaagtgttacagcacaggaatgctttaattt 500

                                                                       
Query: 301 gaattgagtccacagttcaaatgtgagatttcctctcaaaaggttcttgctttgaaggct 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattgagtccacagttcagatgtgagatttcctctcaaaaggttcttgctttgaaggct 560

                                                                       
Query: 361 ttttcttaaactgatacaaatgcagaaactgtagaacatagaacttaatggagcacacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttcttaaactgatacaaatgcagaaactgtagaacatagaacttaatggagcacacag 620

                                                                       
Query: 421 gccactaggcacataccattatgagctatatttttctggggtcttctcttttcctgtttt 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccactaggcacatgccattatgagctatatttttctggggtcttctcttttcctgtttt 680

                                                                       
Query: 481 ttctgtataacactattcaaagagttatgctctactacatattctcctccaataagcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgtataacactattcaaagagttatgctctactacatattctcctccaataagcctc 740

                                                                       
Query: 541 tgaaaatatcagggaaacatgtgactttcaggtgttttatatcactgattggactgtcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaaaatatcagggaaacatgtgactttcaggtgttttatatcactgattggactgtcac 800

                                                      
Query: 601 catgagacaagtcatgaacaagatgacagaatgctgctggtaa 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catgagacaagtcatgaacaagatgacagaatgctgctggtaa 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)