Query= MSMg01no506_n18.b1 MSMg01no506_n18.b1 CHROMAT_FILE:
MSMg01no506_n18.b1 PHD_FILE: MSMg01no506_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:11 2005
(684 letters)
>mm_chr3_31788864_31789949
Length = 1086
Score = 1168 bits (604), Expect = 0.0
Identities = 633/644 (98%), Gaps = 4/644 (0%)
Strand = Plus / Plus
Query: 2 atatccttccctagcctggctgggtttgaacccgcttagaatcctctgttctggatttta 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 atatccttccctagcctggctgggtttgaacccgcttagaatcctctgttctagatttta 261
Query: 62 tctgaactc---ctccgggaagatcatactgaatcagcaggcctctgtgtcttgctggct 118
|| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tc-gaactccttctccaggaagatcatactgaatcagcaggcctctgtgtcttgctggct 320
Query: 119 gacctctccctgtgcaaagtctgagactgcatatgtgggtatataaaacttccaatggct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctctccctgtgcaaagtctgagactgcatatgtgggtatataaaacttccaatggct 380
Query: 179 tctcttcatctatctgcattgattggtttcagtgtctatttattgcatgtgagggtctct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttcatctatctgcattgattggtttcagtgtctatttattgcatgtgagggtctct 440
Query: 239 cagtggactgctattttaagcctatgacttaaaaaaaaatctatgcatactgcttttaat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtggactgctattttaagcctatgacttaaaaaaaaatctatgcatactgcttttaat 500
Query: 299 aggttttgataccttttctgctcagggaaagaaatctttatcacataaagagtaagtcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggttttgataccttttctgctcagggaaagaaatctttatcacataaagagtaagtcat 560
Query: 359 tctcttctccagcctttccttgctctgtcccagtagcttctatttttacctgctaggggt 418
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tctcttctccagcctttcctagctctatcccagtagcttctatttttacctgctaggggt 620
Query: 419 tttgtattaaatcctcaagtattatcattctcttcctctttatattctttgctctgtacc 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tttgtattaaatcctcaagtattatcattctcttcctctttattttctttgctctgtacc 680
Query: 479 tcaaaatatatcatatacttggtcttagatctcgagagtaactagcttctttgataactt 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 tcaaaatatatcatatacttggtcttagatctcgacagtaactagcttctttgataactt 740
Query: 539 ataaatactgtacttggaaaaccaaatatctgacttagaaaattaccatcggagctcaaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataaatactgtacttggaaaaccaaatatctgacttagaaaattaccatcggagctcaaa 800
Query: 599 ttgcctttagttgtttacacacacacacacacacacacacacac 642
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 ttgcctttagttgtttacacacacacacatacacacacacacac 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space: 725224
Effective search space used: 725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_n18.g1 MSMg01no506_n18.g1 CHROMAT_FILE:
MSMg01no506_n18.g1 PHD_FILE: MSMg01no506_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:12 2005
(654 letters)
>mm_chr3_31820527_31821579
Length = 1053
Score = 1257 bits (650), Expect = 0.0
Identities = 653/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 1 tatggattttcttattaatcctcacagaacaaatacaggcatttggctaaccgagaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tatggattttcttattaatcctcacagaacaaatacaggcatttggctaaccgagaagct 794
Query: 61 caaccaccgagtggggaggggagccccaggcgtggatgtgattcacatgtttcactatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 caaccaccgagtggggaggggagccccaggcgtggatgtgattcacatgtttcactatcc 734
Query: 121 agatttcctggtgcttgctgccttgatggtggccaagtctcaggccctctttgcatgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agatttcctggtgcttgctgccttgatggtggccaagtctcaggccctctttgcatgtca 674
Query: 181 gttcatctatcacatgtgtgggaggaggtgggggacagtctcagagattctggtcttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gttcatctatcacatgtgtgggaggaggtgggggacagtctcagagattctggtcttcat 614
Query: 241 ggaccagttttgaatcatttacagacagcagaatctatagctcagatctctctctctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggaccagttttgaatcatttacagacagcagaatctatagctcagatctctctctctctt 554
Query: 301 gtgacagcctgctgtagcatccttcctggttattcataactgtttatttatttggaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtgacagcctgctgtagcatccttcctggttattcataactgtttatttatttggaattt 494
Query: 361 ctctgattataaattttcttgctttctcctaagaggaataaagggatagtattgcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctctgattataaattttcttgctttctcctaagaggaataaagggatagtattgcttttt 434
Query: 421 tgtgtctctccaggaaatgccagccaaagctgttgagaggagaaatgcccctgctcgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtgtctctccaggaaatgccagccaaagctgttgagaggagaaatgcccctgctcgaat 374
Query: 481 gcctttaaaaagtctgtgttggagactaaatctagggcatcccaggtactaggaaaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 373 gcctttaaaaagtctgtgttggagactaaatctagggcatcccaggtactagg-aaaaaa 315
Query: 541 tcccatccttcactcagatgctcagaggggctggagacagcttacatctcggtcatgacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcccatccttcactcagatgctcagaggggctggagacagcttacatctcggtcatgacc 255
Query: 601 caccttgctccctcttgcctcctatctaacctctgcctgtcttcttactctgag 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caccttgctccctcttgcctcctatctaacctctgcctgtcttcttactctgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
