Query= MSMg01no507_a15.b1 MSMg01no507_a15.b1 CHROMAT_FILE:
MSMg01no507_a15.b1 PHD_FILE: MSMg01no507_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:26 2005
(717 letters)
>mm_chr3_55266086_55267202
Length = 1117
Score = 1274 bits (659), Expect = 0.0
Identities = 702/731 (96%), Gaps = 24/731 (3%)
Strand = Plus / Plus
Query: 7 gaattccagagttttacacctgttggcagcttttttttatcagttgaaattgcaacaaag 66
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattccagagtttgagacctgttggcagcttttttttatcagttgaaattgcaacaaag 250
Query: 67 acaaactgtgtggggtttctcagcatctgcgggcaattattttgtcctgtttgaggcaga 126
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 251 acaaactgtgtggggtttctcagcatctgcaggcaattattttgtcctgtttgaggcaga 310
Query: 127 cacatcagaatcaggctggggggatagacaggacataaatgaatgtagaaatgtctagaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cacatcagaatcaggctggggggatagacaggacataaatgaatgtagaaatgtctagaa 370
Query: 187 gtgagttattaaattataaaaacacaatggtccatttttttttaagtctctgggaatgcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtgagttattaaattataaaaacacaatggtccatttttttttaagtctctgggaatgcc 430
Query: 247 acctgtgagtgatttcaacattttctcccactgggtaactaaagacacacacacacacac 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acctgtgagtgatttcaacattttctcccactgggtaactaaagacacacacacaca--- 487
Query: 307 atgcatgtgtctcaaagccttgaacatactcatgaaaatctctcttggcttaaataaagc 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 -tgcatgtgtctcaaagccttgaacatactcatgaaaatctctcttggcttaaataaagc 546
Query: 367 ctccaaaataaataaataaataaataaataa--------------------cttgtgcaa 406
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 547 ctccaaaataaataaataaataaataaataaataaataaataaataaataacttgtgcaa 606
Query: 407 agtacatttttaaaaattatataacctgctgttgtattaaacacaagattgacagaacag 466
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 607 agtacatttttaaaaattatataacctgatgttgtattaaacacaagattgacagaacag 666
Query: 467 tgagtgtctgaagatggctattccctaaggcttttcttcctgggtcacattatgggtcta 526
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 667 tgagtgtctgaagatggctattccctaaggcttttcttcctgagtcacattatgggtcta 726
Query: 527 atttttagctgatgtgcctcctctgactgtctatttccttgggaagatgaattgctatga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atttttagctgatgtgcctcctctgactgtctatttccttgggaagatgaattgctatga 786
Query: 587 aaattctttaatgtgctgtttttctctctgtgtgattcctcttatttctagttaatggaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aaattctttaatgtgctgtttttctctctgtgtgattcctcttatttctagttaatggaa 846
Query: 647 cccctggtagtcagctctctactccacgctcgggcaagtcaccaagtccatcacccacca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cccctggtagtcagctctctactccacgctcgggcaagtcaccaagtccatcacccacca 906
Query: 707 gcccaggaagc 717
|||||||||||
Sbjct: 907 gcccaggaagc 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no507_a15.g1 MSMg01no507_a15.g1 CHROMAT_FILE:
MSMg01no507_a15.g1 PHD_FILE: MSMg01no507_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:26 2005
(644 letters)
>mm_chr3_55453496_55454541
Length = 1046
Score = 1156 bits (598), Expect = 0.0
Identities = 634/646 (98%), Gaps = 2/646 (0%)
Strand = Plus / Minus
Query: 1 tttcatttttagtgaatctttgtgaaagtttacatgaaggaaactgagagaaattcattc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 846 tttcatttttagtgaatctttgtgaaagtttacatgaaggaagctgagagaaattcattc 787
Query: 61 atagcttaaagtaatatcccagaatacctcttaaagcacatagcaagctgaactgtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atagcttaaagtaatatcccagaatacctcttaaagcacatagcaagctgaactgtgttt 727
Query: 121 ttgtattgaaagtgttgctctcttttattgcaacaacaaagccttggtgttcagacctgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 726 ttgtattgaaagtgttgctctcttttattgcaacaacaaagccttggtgttcagacctcg 667
Query: 181 ggttgccctc-tgtgttgactgaaatgcataattttcattgttatgtcagtggtagtcat 239
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 666 ggttgccctcgggtgttgactgaaatgcataattttcatttttatgtcagtggtagtcat 607
Query: 240 tgtgtctaattctctttcccatgaagattccagaagctgatttcgttagaga-ccccata 298
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct: 606 tgtgtctaattctctttcccatgaagattccagaagcttatttcattagagacccccata 547
Query: 299 cggtccttcttacaaaggactttattaaggtccctggatggtatttagtgctaaggtgtt 358
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 546 cgttccttcttacaaaggactttattaaggtacctgtatggtatttagtgctaaggtgtt 487
Query: 359 ctttggtctttaactgcatgcatggatgcacagattatcatttctgtgtttaaccccagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctttggtctttaactgcatgcatggatgcacagattatcatttctgtgtttaaccccagc 427
Query: 419 tcctgacgatgacagcggtgctgtgcttaactgaagcatggttagaagaagtgaagcttg 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctgacgatgacagcggtgctgtgcttaactgaagcatggttagaagaagtgaagcttg 367
Query: 479 tccataaatactaacaaacacttgcagagttctgggccctgagaaaagagcactcctgga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tccataaatactaacaaacacttgcagagttctgggccctgagaaaagagcactcctgga 307
Query: 539 attttctggactctttttatggctaacttgagctccacttgcattgtcaaaagtgtgctg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 attttctggactctttttatggctaacttgagctccacttgcattgtcaaaagtgtgctg 247
Query: 599 acctctcttttgacacgtattgattatgacagtcaccctccttgcc 644
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acctctcttttgacacgtattgattatgacagtcaccctccttgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space: 656824
Effective search space used: 656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
