BAC Information

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BAC

Clone NameMSMg01-507B01
Chromosome3 (Build37)
Map Location 84,225,927 - 84,226,545
singlet/doubletsinglet
Overlap genenone
Upstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507B01.T7 (MSMg01no507_b01.b1)MSMg01-507B01.TJ (MSMg01no507_b01.g1)
ACCAG581305AG581306
length637755
length of high quality
(start - end)
626 (5 - 630)426 (74 - 499)
definitionCHROMAT_FILE: MSMg01no507_b01.b1 PHD_FILE: MSMg01no507_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:28 2005CHROMAT_FILE: MSMg01no507_b01.g1 PHD_FILE: MSMg01no507_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCAACATCTGCAGTGTGAGCCAGATTTCTCTGTCA
CACCTCAGACCAACATGAAGCAGGAACACGTGGGAAGTGAATTCACACAT
ATCTGAGCTGTCAGGCCAGCCCCCTTACAATCCCTCCGTGCATTGGCAAC
CTGACTTTCAGTTCCTGACTGTACATAGCTAAGTCAGTAGACCACCAGGA
AGGGGCTGGCCAGCATGGGAAATAGCAGCTGTGCTCCTGAAATACATACA
CAGTTCCCTGTAGGGTAGGAAATGTCGATTCCTAATTCCTACTTCAGGAT
AAATTTGGCAGAAAAGGGGCCGGCAGTGGGGTAGAGGCCGACTGTGAATC
ATGGGTGCACCTGGACCCCGGGCATCCTCCCGAAAGTCCTGTAACTGGTT
ATCAGCAACTCCCGCTCTGGGGGACAAGGATGACCGTATCGGGTGCTCTT
TTAAGTTGACTGTCTAAGGCAGTGGTTCTCAGCCTTCCTAATCTGTGACC
CTTTAAGGCAGCTCCTCGTGTTGTAGGACCACCCCCACCCACCCCCAACC
ATGAAGTTATTTTCATTGCTACTTCGTGACTGTAATTTTGCTGCTTTTAT
GAATCTTTTCATTTTGTTTTTGAGACAGAGTTCCTCT
NCCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATTTTGGAGATAGGAAACACTTTGAC
TGTGTATTTGTTATATGCGTGTACAGATACACATACATGTGCAGGTATGC
ATGTGGCTGTGTGTGTGTGTGTGTCTGTGTGTGTGTAGGTCAGAGCACAG
AACAACCTTATTTGTCATCTTCAGGAGCATCATCCACCTTGATTTAGAGA
CTAAGTCTCTCATCGGTTTGGAGTTTGTCACACAGGCTTAGCTGGCTGTC
ATATGAGTCTCAGATCCCCACCCCCTCCTCCTGGGATTATCAGCAAGCAT
CACCATCCTTGGCTTTTTCATTGAATTCTGGTTATTCAGTTTAGGTTATC
AAGTTTGCACTTTACTGTGGAGCCATTTTCCAGGCCCAAATATTTGTTAC
ATTTCAAAAAGTATGGCTGTGGTGTGCGTCAGTGGTAGGCTGCTTCTTGG
AATGACAANGCTCTTGGCTCCCTTATGACAATGAGCCTGTGGGTCGAGAC
CCCTTTAGGGGTCAAATGACCCTTTCAGAGAGGTCGCTTAATACCACTGG
GAAAACACACAGATTTCCATTATAGTTCATAACAGTAGCCCAAATTATAG
TTTGTGGAAATAAGCAATGGAAAATTATTTTTTTGGCTTGGGGGGAAGGT
CAACTCTTCCCTGGAGGGAACTTTTTTTTATAAGGGGTTGGTCAGTTATT
TAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_b01.b1 MSMg01no507_b01.b1 CHROMAT_FILE:
MSMg01no507_b01.b1 PHD_FILE: MSMg01no507_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:28 2005
         (626 letters)



>mm_chr3_84225881_84226906
          Length = 1026

 Score = 1189 bits (615), Expect = 0.0
 Identities = 618/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaacatctgcagtgtgagccagatttctctgtcacacctcagaccaacatgaagc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcaacatctgcagtgtgagccagatttctctgtcacacctcagaccaacatgaagc 606

                                                                       
Query: 68  aggaacacgtgggaagtgaattcacacatatctgagctgtcaggccagcccccttacaat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aggaacacgtgggaagtgaattcacacatatctgagctgtcaggccagcccccttacaat 546

                                                                       
Query: 128 ccctccgtgcattggcaacctgactttcagttcctgactgtacatagctaagtcagtaga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ccctccgtgcattggcaacctgactttcagttcctgactgtacatagctaagtcagtaga 486

                                                                       
Query: 188 ccaccaggaaggggctggccagcatgggaaatagcagctgtgctcctgaaatacatacac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccaccaggaaggggctggccagcatgggaaatagcagctgtgctcctgaaatacatacac 426

                                                                       
Query: 248 agttccctgtagggtaggaaatgtcgattcctaattcctacttcaggataaatttggcag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agttccctgtagggtaggaaatgtcgattcctaattcctacttcaggataaatttggcag 366

                                                                       
Query: 308 aaaaggggccggcagtggggtagaggccgactgtgaatcatgggtgcacctggaccccgg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaaggggccggcagtggggtagaggccgactgtgaatcatgggtgcacctggaccccgg 306

                                                                       
Query: 368 gcatcctcccgaaagtcctgtaactggttatcagcaactcccgctctgggggacaaggat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcatcctcccgaaagtcctgtaactggttatcagcaactcccgctctgggggacaaggat 246

                                                                       
Query: 428 gaccgtatcgggtgctcttttaagttgactgtctaaggcagtggttctcagccttcctaa 487
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gatcgtatcgggtgctcttttaagttgactgtctaaggcagtggttctcagccttcctaa 186

                                                                       
Query: 488 tctgtgaccctttaaggcagctcctcgtgttgtaggaccacccccacccacccccaacca 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tctgtgaccctttaaggcagctcctcgtgttgtaggaccacccccacccacccccaacca 126

                                                                       
Query: 548 tgaagttattttcattgctacttcgtgactgtaattttgctgcttttatgaatcttttca 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgaagttattttcattgctacttcgtgactgtaattttgctgcttttatgaatcttttca 66

                              
Query: 608 ttttgtttttgagacagag 626
           |||||||||||||||||||
Sbjct: 65  ttttgtttttgagacagag 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)