Query= MSMg01no507_e18.b1 MSMg01no507_e18.b1 CHROMAT_FILE:
MSMg01no507_e18.b1 PHD_FILE: MSMg01no507_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:47 2005
(630 letters)
>mm_chr3_34118382_34119413
Length = 1032
Score = 1141 bits (590), Expect = 0.0
Identities = 618/628 (98%), Gaps = 2/628 (0%)
Strand = Plus / Minus
Query: 5 gaattctctcaagatgacctgacacattcatgtaaagtaaaacaaaaacagg--gaaaaa 62
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 832 gaattctctcaagatgacctgacacattcatgtaaagtaaaacaaaaacaggaaaaaaaa 773
Query: 63 aaaaaaagactatagttggtatgcccaggctgcctctgtaggagaatttcctcctgggat 122
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 772 aaaaaaagactatagttggtatgcccaggttgcctctgtaggagaatttcctcctgggat 713
Query: 123 tcttagaatcactgaagggtgactcgactgccaacagaggtgccaggaggtccctgagtc 182
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tcttagactcactgaagggtgactcgactgccaacagaggtgccaggaggtccctgagtc 653
Query: 183 acctcacgcatggctgacttgctccatcccagccactgtcacattctggccacagagaaa 242
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acctcacgcatggctgacttgttccatcccagccactgtcacattctggccacagagaaa 593
Query: 243 tgaagctgcctttgcagtcgacacccacttcaacacagtgttagataaaagggctagaga 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgaagttgcctttgcagtcgacacccacttcaacacagtgttagataaaagggctagaga 533
Query: 303 ggcatattgcttccacgcaacagcgatcacacccgtaccacaatgcaggcacctaatctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggcatattgcttccacgcaacagcgatcacacccgtaccacaatgcaggcacctaatctg 473
Query: 363 gattgtaaggaaaacagcccgtgcccttcatcttcttgaaaaactcaagagctaaactgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gattgtaaggaaaacagcccgtgcccttcatcttcttgaaaaactcaagagctaaactgg 413
Query: 423 gtccgagacgaaaacctttgcaagtacaagcacggcatcacctagcaagagaagcctccc 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 412 gtccgagacgaaaacctttgcaagtacaagtacggcatcacctagcaagagaagcctccc 353
Query: 483 ttgctttgggaagtaagagaggcaaagagtgaagtttcccaggggagcactggagaaaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgctttgggaagtaagagaggcaaagagtgaagtttcccaggggagcactggagaaaaa 293
Query: 543 gtcgcaagatcatcacttggggttatgtggggtgaggtgatggctcgggtgtgagagaca 602
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 292 gtcacaagatcatcacttggggttatgtggggtgaggtgatggcttgggtgtgagagaca 233
Query: 603 ggaactctgcatgcttcctgtgaggatg 630
||||||||||||||||||||||||||||
Sbjct: 232 ggaactctgcatgcttcctgtgaggatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1032
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1022
Effective search space: 633640
Effective search space used: 633640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_e18.g1 MSMg01no507_e18.g1 CHROMAT_FILE:
MSMg01no507_e18.g1 PHD_FILE: MSMg01no507_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:47 2005
(500 letters)
>mm_chr3_33917931_33918830
Length = 900
Score = 851 bits (440), Expect = 0.0
Identities = 492/526 (93%), Gaps = 26/526 (4%)
Strand = Plus / Plus
Query: 1 ttttaagtactatttccaaaagccttgctttcagaagttggcattaacttatcaaactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaagtactatttccaaaagccttgctttcagaagttggcattaacttatcaaactaa 260
Query: 61 gtatgagtgccacaaagcttctagaactggtggcgtttctggtaaagtcacacaacacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgagtgccacaaagcttctagaactggtggcgtttctggtaaagtcacacaacacaa 320
Query: 121 aacccaataagttcttggatcctctttgcaaaacttctcacgtgtaacctatcaggggtg 180
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aacccaataggttcttggatcctctttgcaaaacttcccacgtgtaacctatcaggggtg 380
Query: 181 ggaggaatacactttcccattgtttaaaaaattttaaaagtaatgccagcactccgatgg 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ggaggaatacactttcccattgtttaaaattttttaaaagtaatgccagcactccgatgg 440
Query: 241 ccagaggcagaggcagttctgtgggttcaaggccacccaggggtagagaactgtgtctca 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagaggcagaagcagttctgtgggttcaaggccacccaggggtagagaactgtgtctca 500
Query: 301 aacaggatccccccacaaaattagcctaggtttcccgagcctttaataacgtattaaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaggatccccccacaaaattagcctaggtttcccgagcctttaataacgtattaaggt 560
Query: 361 aaccgtgctcggtcggtgacaggtgagtgagctgccttcgcgcggggcgaggcctgagaa 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 aaccgtgctcggtcggtgacaggtgagtgagctgccttcgcgcgaggcgaggcctgagaa 620
Query: 421 ctgcg--------------------------cgggttcgtcctgggaaaggctcttcaag 454
||||| |||||||||||||||||||||||||||||
Sbjct: 621 ctgcgtgaggctcgggggaagccccgagtcccgggttcgtcctgggaaaggctcttcaag 680
Query: 455 gggacggcccgaggctccagaggggaggctccatgcgggcaaacct 500
|||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 681 gggacggcccgaggctccagagggaaggctccatgagggcaaacct 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
